Research graph
References from High quality genome assembly of the brown hare (Lepus europaeus) with chromosome-level scaffolding. Local targets link to admitted publications; unresolved targets remain external evidence.
Salting out method for DNA extraction from cells. Sample Preparation Demostrated Protocol
2017 · External reference
Improving the genome assembly of rabbits with long-read sequencing
10.1016/j.ygeno.2021.05.031 · 2021 · External reference
Reconstruction of karyotype evolution in core Glires. I. The genome homology revealed by comparative chromosome painting
10.1007/s10577-011-9210-y · 2011 · External reference
Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation
10.1016/j.ymeth.2017.04.004 · 2017 · External reference
GeneWise and Genomewise
10.1101/gr.1865504 · 2004 · External reference
Why sequence all eukaryotes?
10.1073/pnas.2115636118 · 2022 · External reference
Lepus europaeus (Lagomorpha: Leporidae)
10.1093/mspecies/seaa010 · 2020 · External reference
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
10.1093/nargab/lqaa108 · 2021 · External reference
Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
10.1126/science.1253714 · 2014 · External reference
Runs of homozygosity: windows into population history and trait architecture
10.1038/nrg.2017.109 · 2018 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
10.1038/s41592-020-01056-5 · 2021 · External reference
Nucleotide sequence of a region of human mitochondrial DNA containing the precisely identified origin of replication
10.1038/277192a0 · 1979 · External reference
Long term storage in liquid nitrogen leads to only minor phenotypic and gene expression changes in the mammary carcinoma model cell line BT474
10.18632/oncotarget.16623 · 2017 · External reference
The Legacy of Recurrent Introgression during the Radiation of Hares
10.1093/sysbio/syaa088 · 2021 · External reference
Cladogenesis of the European brown hare (Lepus europaeus Pallas, 1778)
10.1007/s10344-008-0175-x · 2008 · External reference
Lagomorphs (rabbits, pikas and hares) do not use telomere-directed replicative aging in vitro
10.1016/j.mad.2005.01.003 · 2005 · External reference
Mitochondrial RNA polymerase is needed for activation of the origin of light-strand DNA replication
10.1016/j.molcel.2009.12.021 · 2010 · External reference
Molecular phenotyping uncovers differences in basic housekeeping functions among closely related species of hares (Lepus spp., Lagomorpha: Leporidae)
10.1111/mec.16755 · 2022 · External reference
Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST
10.1186/1741-7007-4-41 · 2006 · External reference
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
10.1371/journal.pcbi.1007273 · 2019 · External reference
The evolutionary pathways for local adaptation in mountain hares
10.1111/mec.16338 · 2022 · External reference
Mitotic and meiotic chromosomes of the variable hare (Lepus timidus L.), the common hare (Lepus europaeus Pall.) and their hybrids
10.1111/j.1601-5223.1971.tb02355.x · 1972 · External reference
Unresolved reference
2005 · External reference
A high quality reference genome of the brown hare
10.24072/pci.genomics.100299 · 2024 · External reference
Significantly improving the quality of genome assemblies through curation
10.1093/gigascience/giaa153 · 2021 · External reference
Historical ecology and current status of the European hare Lepus europaeus in South America: a new species in new countries
10.1080/01650521.2023.2217064 · 2023 · External reference
DToL Tissue and Blood Sampling Standard Operating Procedure: Chordata: Vertebrata (general) v1
10.17504/protocols.io.n92ldmjool5b/v1 · 2023 · External reference
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements
10.1093/nar/gkr1131 · 2012 · External reference
The Strength of Selection against Neanderthal Introgression
10.1371/journal.pgen.1006340 · 2016 · External reference
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
10.1038/s41587-019-0201-4 · 2019 · External reference
Complete homology maps of the rabbit (Oryctolagus cuniculus) and human by reciprocal chromosome painting
10.1159/000015325 · 1999 · External reference
Circos: an information aesthetic for comparative genomics
10.1101/gr.092759.109 · 2009 · External reference
Standards recommendations for the Earth BioGenome Project
10.1073/pnas.2115639118 · 2022 · External reference
Mitochondrial DNA introgression at the northern edge of the brown hare (Lepus europaeus) range
10.5735/086.055.0103 · 2018 · External reference
Home ranges of semi-urban brown hares (Lepus europaeus) and mountain hares (Lepus timidus) at northern latitudes
10.5735/086.056.0110 · 2019 · External reference
Widespread introgression of mountain hare genes into Fennoscandian brown hare populations
10.1371/journal.pone.0191790 · 2018 · External reference
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
10.1093/bioinformatics/btv033 · 2015 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
Fast and accurate short read alignment with Burrows-Wheeler transform
10.1093/bioinformatics/btp324 · 2009 · External reference
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
10.1126/science.1181369 · 2009 · External reference
BUSCO: Assessing Genomic Data Quality and Beyond
10.1002/cpz1.323 · 2021 · External reference
An Annotated Draft Genome of the Mountain Hare (Lepus timidus)
10.1093/gbe/evz273 · 2020 · External reference
Biodiversity: an atlas of European reference genomes
10.1038/d41586-023-02229-w · 2023 · External reference
The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression
10.1093/gbe/evu059 · 2014 · External reference
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
10.1093/nar/gkz173 · 2019 · External reference
Versatile genome assembly evaluation with QUAST-LG
10.1093/bioinformatics/bty266 · 2018 · External reference
Genetic analyses of brown hare (Lepus europaeus) support limited migration and translocation of Greek populations
10.1371/journal.pone.0206327 · 2018 · External reference
157. Lepus (Eulagus) europeaus Pall
1940 · External reference
Pairtools: from sequencing data to chromosome contacts
10.1101/2023.02.13.528389 · 2023 · External reference
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
10.1186/s13059-019-1905-y · 2019 · External reference
Lepus europaeus (European hare)
10.1079/cabicompendium.77227 · 2013 · External reference
Hybridization with mountain hares increases the functional allelic repertoire in brown hares
10.1038/s41598-021-95357-0 · 2021 · External reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
10.1038/s41467-020-14998-3 · 2020 · External reference
European hare (Lepus europaeus) invasion ecology: implication for the conservation of the endemic Irish hare (Lepus timidus hibernicus)
10.1007/s10530-010-9849-x · 2010 · External reference
Is naturalisation of the brown hare in Ireland a threat to the endemic Irish hare?
10.1353/bae.2007.0006 · 2007 · External reference
Ajojahdilla [flush hunting of hares]
1925 · External reference
Rusakkojäniksen leviämisalue Suomessa [Distribution of the brown hare in Finland]
1924 · External reference
Coexistence of European hares and Alpine mountain hares in the Alps: what drives the occurrence and frequency of their hybrids?
10.1111/jzo.13067 · 2023 · External reference
Spring and autumn habitat preferences of active European hares (Lepus europaeus) in an agricultural area with low hare density
10.1007/s10344-012-0684-5 · 2013 · External reference
Establishing Primary Adult Fibroblast Cultures From Rodents
10.3791/2033 · 2010 · External reference
Unresolved reference
1972 · External reference
Extraordinary selection on the human X chromosome associated with archaic admixture
10.1016/j.xgen.2023.100274 · 2023 · External reference
RepeatMasker Open-4.0
2013 · External reference
A quantitative analysis of the abundance and demography of European hares Lepus europaeus in relation to habitat type, intensity of agriculture and climate
10.1111/j.1365-2907.2005.00057.x · 2005 · External reference
Use of space by sympatric European hares (Lepus europaeus) and European rabbits (Oryctolagus cuniculus) in Australia
10.1078/1616-5047-00099 · 2003 · External reference
Rusakkojäniksen leveneminen Suomessa [Distribution of the brown hare in Finland]
1922 · External reference
The distribution of mountain hares (Lepus timidus, L. 1758) in Europe: A challenge from brown hares (L. europaeus, Pall. 1778)?
10.1046/j.1365-2907.2003.00008.x · 2003 · External reference
Biased geographical distribution of mitochondrial DNA that passed the species barrier from mountain hares to brown hares (genus Lepus): an effect of genetic incompatibility and mating behaviour?
10.1017/s0952836902001425 · 2002 · External reference
Hunting harvest data in Sweden indicate precipitous decline in the native mountain hare subspecies Lepus timidus sylvaticus (heath hare)
10.1016/j.jnc.2021.126069 · 2021 · External reference
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
10.1186/s12859-023-05385-y · 2023 · External reference
Genome size and GC-percent in vertebrates as determined by flow cytometry: The triangular relationship
10.1002/(sici)1097-0320(19980201)31:2 · 1998 · External reference
Rusakkojäniksen (Lepus europaeus) nykyisestä leviämisestä Suomessa [The current distribution of the brown hare in Finland]
1910 · External reference
nhmmer: DNA homology search with profile HMMs
10.1093/bioinformatics/btt403 · 2013 · External reference
Speciation genetics: current status and evolving approaches
10.1098/rstb.2010.0023 · 2010 · External reference
YaHS: yet another Hi-C scaffolding tool
10.1093/bioinformatics/btac808 · 2022 · External reference
