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References from T7 DNA polymerase treatment improves quantitative sequencing of both double-stranded and single-stranded DNA viruses. Local targets link to admitted publications; unresolved targets remain external evidence.
The Statistical Analysis of Compositional Data
10.1111/j.2517-6161.1982.tb01195.x · 1982 · External reference
Taxonomic Assignment of Uncultivated Prokaryotic Virus Genomes Is Enabled by Gene-Sharing Networks
10.1038/s41587-019-0100-8 · 2019 · External reference
Highly Efficient DNA Synthesis by the Phage ϕ 29 DNA Polymerase
10.1016/s0021-9258(18)81883-x · 1989 · External reference
Massive Expansion of Human Gut Bacteriophage Diversity
10.1016/j.cell.2021.01.029 · 2021 · External reference
Replication Slippage of Different DNA Polymerases Is Inversely Related to Their Strand Displacement Efficiency
10.1074/jbc.274.39.27481 · 1999 · External reference
Optimizing Protocols for Extraction of Bacteriophages Prior to Metagenomic Analyses of Phage Communities in the Human Gut
10.1186/s40168-015-0131-4 · 2015 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
INfrastructure for a PHAge REference Database: Identification of Large-Scale Biases in the Current Collection of Cultured Phage Genomes
10.1089/phage.2021.0007 · 2021 · External reference
Emergence of Variability in Isogenic Escherichia Coli Populations Infected by a Filamentous Virus
10.1371/journal.pone.0011823 · 2010 · External reference
A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples
10.3390/v11070667 · 2019 · External reference
On the Structure of the Escherichia Coli C Cell Wall Lipopolysaccharide Core and on Its phiX174 Receptor Region
10.1016/0006-291x(76)90824-x · 1976 · External reference
Environmental Adjustments of the Cooperativity in M13 Phage Thermal Denaturation
10.1016/j.tca.2018.12.010 · 2019 · External reference
The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut
10.1016/j.chom.2020.08.003 · 2020 · External reference
VirSorter2: A Multi-Classifier, Expert-Guided Approach to Detect Diverse DNA and RNA Viruses
10.1186/s40168-020-00990-y · 2021 · External reference
Primer Release Is the Rate-Limiting Event in Lagging-Strand Synthesis Mediated by the T7 Replisome
10.1073/pnas.1604894113 · 2016 · External reference
Comparison of PCR versus PCR-free DNA Library Preparation for Characterising the Human Faecal Virome
10.3390/v13102093 · 2021 · External reference
Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification
10.1186/1471-2105-11-119 · 2010 · External reference
BLAT–the BLAST-like Alignment Tool
10.1101/gr.229202 · 2002 · External reference
VIBRANT: Automated Recovery, Annotation and Curation of Microbial Viruses, and Evaluation of Viral Community Function from Genomic Sequences
10.1186/s40168-020-00867-0 · 2020 · External reference
Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
10.1128/aem.00289-11 · 2011 · External reference
Fast Gapped-Read Alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
A Preformed, Topologically Stable Replication Fork. Characterization of Leading Strand DNA Synthesis Catalyzed by T7 DNA Polymerase and T7 Gene 4 Protein.
10.1016/s0021-9258(17)44402-4 · 1983 · External reference
Fast and Accurate Short Read Alignment with Burrows-Wheeler Transform
10.1093/bioinformatics/btp324 · 2009 · External reference
Improving the Sequencing of Single-Stranded DNA Viruses: Another Brick for Building Earth's Complete Virome Encyclopedia
10.24072/pci.genomics.100335 · 2024 · External reference
Phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
10.1371/journal.pone.0061217 · 2013 · External reference
CheckV Assesses the Quality and Completeness of Metagenome-Assembled Viral Genomes
10.1038/s41587-020-00774-7 · 2021 · External reference
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
10.1038/s41564-021-00928-6 · 2021 · External reference
MetaPhage: An Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data
10.1128/msystems.00741-22 · 2022 · External reference
Données de Réplication Pour Deep Sequencing of Two Mock Phage Communities
10.57745/c0bapr · 2022 · External reference
Using Spades de Novo Assembler
10.1002/cpbi.102 · 2020 · External reference
Towards Quantitative Viromics for Both Double-Stranded and Single-Stranded DNA Viruses
10.7717/peerj.2777 · 2016 · External reference
Comparison of interferometric light microscopy with nanoparticle tracking analysis for the study of extracellular vesicles and bacteriophages
10.1002/jex2.75 · 2023 · External reference
Expanding known viral diversity in the healthy infant gut
10.1038/s41564-023-01345-7 · 2023 · External reference
Reproducible Protocols for Metagenomic Analysis of Human Faecal Phageomes
10.1186/s40168-018-0446-z · 2018 · External reference
Protein homology detection by HMM–HMM comparison
10.1093/bioinformatics/bti125 · 2004 · External reference
PHROG: Families of Prokaryotic Virus Proteins Clustered Using Remote Homology
10.1093/nargab/lqab067 · 2021 · External reference
Cenote-Taker 2 Democratizes Virus Discovery and Sequence Annotation
10.1093/ve/veaa100 · 2021 · External reference
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems
10.1109/ipdps.2019.00041 · 2019 · External reference
Optimization and evaluation of viral metagenomic amplification and sequencing procedures toward a genome-level resolution of the human fecal DNA virome
10.1016/j.jare.2022.08.011 · 2023 · External reference
Multiple displacement amplification compromises quantitative analysis of metagenomes
10.1038/nmeth1210-943 · 2010 · External reference
