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References from Exploring the effects of ecological parameters on the spatial structure of genetic tree sequences. Local targets link to admitted publications; unresolved targets remain external evidence.
Deconstructing isolation-by-distance: The genomic consequences of limited dispersal
10.1371/journal.pgen.1006911 · 2017 · External reference
Space is the place: effects of continuous spatial structure on analysis of population genetic data
10.1534/genetics.120.303143 · 2020 · External reference
apTreeshape: statistical analysis of phylogenetic tree shape
10.1093/bioinformatics/bti798 · 2006 · External reference
Spatial population genetics: it's about time
10.1146/annurev-ecolsys-110316-022659 · 2019 · External reference
Evaluation of methods for estimating coalescence times using ancestral recombination graphs
10.1093/genetics/iyac044 · 2022 · External reference
Phylogeography and molecular epidemiology of Papaya ringspot virus
10.1016/j.virusres.2011.04.011 · 2011 · External reference
Demographic and genetic approaches to study dispersal in wild animal populations: A methodological review
10.1111/mec.14848 · 2018 · External reference
The effects of genetic and geographic structure on neutral variation
10.1146/annurev.ecolsys.34.011802.132359 · 2003 · External reference
Why trees migrate so fast: confronting theory with dispersal biology and the paleorecord
10.2307/2463485 · 1998 · External reference
Maximum-likelihood estimation of evolutionary trees from continuous characters
10.2307/2408134 · 1973 · External reference
A Pain in the Torus: Some Difficulties with Models of Isolation by Distance
10.1086/283003 · 1975 · External reference
The wave of advance of advantageous genes
10.1111/j.1469-1809.1937.tb02153.x · 1937 · External reference
An ancestral recombination graph
10.1007/978-1-4757-2609-1_16 · 1997 · External reference
Ancestral Inference from Samples of DNA Sequences with Recombination
10.1089/cmb.1996.3.479 · 1996 · External reference
ggplot2-elegant graphics for data analysis
10.18637/jss.v035.b01 · 2017 · External reference
Tree-sequence recording in SLiM opens new horizons for forward-time simulation of whole genomes
10.1111/1755-0998.12968 · 2019 · External reference
SLiM 3: forward genetic simulations beyond the Wright–Fisher model
10.1093/molbev/msy228 · 2019 · External reference
Isolation by distance in a continuous population: reconciliation between spatial autocorrelation analysis and population genetics models
10.1038/sj.hdy.6885580 · 1999 · External reference
Inference of ancestral recombination graphs using ARGweaver
10.1007/978-1-0716-0199-0_10 · 2020 · External reference
Gene genealogies and the coalescent process
1990 · External reference
mkiravn/treesinspace: Code for Exploring the effects of ecological parameters on the spatial structure of genetic tree sequences (v0.1.0)
10.5281/zenodo.10402649 · 2023 · External reference
A meta-analysis of isolation by distance: relic or reference standard for landscape genetics?
10.1111/j.1600-0587.2010.06285.x · 2010 · External reference
Efficient pedigree recording for fast population genetics simulation
10.1371/journal.pcbi.1006581 · 2018 · External reference
Inferring whole-genome histories in large population datasets
10.1038/s41588-019-0483-y · 2019 · External reference
Moments, cumulants, skewness, kurtosis and related tests
10.32614/cran.package.moments · 2015 · External reference
Dispersal data and the spread of invading organisms
10.2307/2265698 · 1996 · External reference
Robust, universal tree balance indices
10.1093/sysbio/syac027 · 2022 · External reference
Sex-biased dispersal: A review of the theory
10.1111/brv.12475 · 2019 · External reference
Female philopatry and male-biased dispersal in a direct-developing salamander, Plethodon cinereus
10.1111/j.1365-294x.2010.04946.x · 2011 · External reference
Phylogeography and molecular epidemiology of hepatitis C virus genotype 2 in Africa
10.1099/vir.0.011569-0 · 2009 · External reference
Population outbreaks in a discrete world
10.1006/tpbi.1999.1444 · 2000 · External reference
The molecular epidemiology and phylogeography of Trypanosoma cruzi and parallel research on Leishmania: looking back and to the future
10.1017/s0031182009990977 · 2009 · External reference
Package ‘VGAM’
10.32614/cran.package.vgamextra · 2022 · External reference
Modeling the spatiotemporal spread of beneficial alleles using ancient genomes
10.7554/elife.73767 · 2022 · External reference
Genes mirror geography within Europe
10.1038/nature07566 · 2008 · External reference
Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence
10.1038/ng711 · 2001 · External reference
Disentangling the impact of mating and competition on dispersal patterns
10.24072/pci.evolbiol.100655 · 2024 · External reference
Estimating dispersal rates and locating genetic ancestors with genome-wide genealogies
10.1101/2021.07.13.452277 · 2021 · External reference
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
10.1093/bioinformatics/bty633 · 2019 · External reference
The impact of long-range dispersal on gene surfing
10.1073/pnas.1919485117 · 2020 · External reference
Simple Features for R: Standardized Support for Spatial Vector Data
10.32614/rj-2018-009 · 2018 · External reference
slendr: a framework for spatio-temporal population genomic simulations on geographic landscapes
10.24072/pcjournal.354 · 2023 · External reference
Genome-wide inference of ancestral recombination graphs
10.1371/journal.pgen.1004342 · 2014 · External reference
Inferring recent demography from isolation by distance of long shared sequence blocks
10.1534/genetics.116.196220 · 2017 · External reference
Isolation by distance in a continuous population under stochastic demographic fluctuations
10.1111/j.1420-9101.2009.01860.x · 2010 · External reference
Inferences from spatial population genetics
10.1002/0470022620.bbc24 · 2001 · External reference
Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance
10.1093/genetics/145.4.1219 · 1997 · External reference
Male-Mediated Gene Flow in Patrilocal Primates
10.1371/journal.pone.0021514 · 2011 · External reference
Genetic isolation by environment or distance: which pattern of gene flow is most common?
10.1111/evo.12258 · 2014 · External reference
Dispersal inference from population genetic variation using a convolutional neural network
10.1093/genetics/iyad068 · 2023 · External reference
Isolation by Distance in Populations with Power-law Dispersal
10.1101/2020.06.24.168211 · 2020 · External reference
A method for genome-wide genealogy estimation for thousands of samples
10.1038/s41588-019-0484-x · 2019 · External reference
Population genetic models for the spatial spread of adaptive variants: A review in light of SARS-CoV-2 evolution
10.1371/journal.pgen.1010391 · 2022 · External reference
Zusammensetzung von Populationen und Korrelationserscheinungen vom Standpunkt der Vererbungslehre aus betrachtet
10.1111/j.1601-5223.1928.tb02483.x · 1928 · External reference
The coalescent in a continuous, finite, linear population
10.1093/genetics/161.2.873 · 2002 · External reference
A unified genealogy of modern and ancient genomes
10.1126/science.abi8264 · 2022 · External reference
10.1007/bfb0013163
10.1007/bfb0013163 · 1991 · External reference
Isolation by distance
10.1093/genetics/28.2.114 · 1943 · External reference