References

High-quality metagenome assembly from long accurate reads with metaMDBG

10.1038/s41587-023-01983-6 · 2024 · External reference

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes

10.1038/s41587-019-0191-2 · 2019 · External reference

Chinese whispers: An efficient graph clustering algorithm and its application to natural language processing problems

10.3115/1654758.1654774 · 2006 · External reference

HaploDMF: viral Haplotype reconstruction from long reads via Deep Matrix Factorization

10.1093/bioinformatics/btac708 · 2022 · External reference

Genetics of leukocyte antigens: a family study of segregation and linkage.

1967 · External reference

Flexible and cost-effective genomic surveillance of P. falciparum malaria with targeted nanopore sequencing

10.1038/s41467-024-45688-z · 2024 · External reference

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

10.1038/s41592-020-01056-5 · 2021 · External reference

Soil microbiota as game-changers in restoration of degraded lands

10.1126/science.abe0725 · 2022 · External reference

The impact of diet and lifestyle on gut microbiota and human health

10.3390/nu7010017 · 2014 · External reference

Unresolved reference

2002 · External reference

Replication data for: HairSplitter: separating haplotypes with long reads [Data set]

10.5281/zenodo.11639887 · 2024 · External reference

Hairsplitter: v1.9.17

10.5281/zenodo.13753481 · 2024 · External reference

GraphUnzip: unzipping assembly graphs with long reads and Hi-C

10.1101/2021.01.29.428779 · 2021 · External reference

Metagenome assembly of high-fidelity long reads with hifiasm-meta

10.1038/s41592-022-01478-3 · 2022 · External reference

Detecting and phasing minor single-nucleotide variants from long-read sequencing data

10.1038/s41467-021-23289-4 · 2021 · External reference

Discriminatory Analysis. Nonparametric Discrimination: Consistency Properties

10.2307/1403797 · 1989 · External reference

Genomic analysis of human Noroviruses using combined Illumina-Nanopore data

10.1093/ve/veab079 · 2021 · External reference

Epidemic profile of shiga-toxin–producing Escherichia coli O104:H4 outbreak in Germany

10.1056/nejmoa1106483 · 2011 · External reference

Metagenomic assembly: overview, challenges and applications

2016 · External reference

StrainXpress: strain aware metagenome assembly from short reads

10.1093/nar/gkac543 · 2022 · External reference

10.1101/2023.01.31.526521

10.1101/2023.01.31.526521 · 2023 · External reference

metaFlye: scalable long-read metagenome assembly using repeat graphs

10.1038/s41592-020-00971-x · 2020 · External reference

Recent Advances in Assembly of Complex Plant Genomes

10.1016/j.gpb.2023.04.004 · 2023 · External reference

Genomic insights that advance the species definition for prokaryotes

10.1073/pnas.0409727102 · 2005 · External reference

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

10.1101/gr.215087.116 · 2017 · External reference

Minimap2: pairwise alignment for nucleotide sequences

10.1093/bioinformatics/bty191 · 2018 · External reference

The design and construction of reference pangenome graphs with minigraph

10.1186/s13059-020-02168-z · 2020 · External reference

ConStrains identifies microbial strains in metagenomic datasets

10.1038/nbt.3319 · 2015 · External reference

Strainline: full-length de novo viral haplotype reconstruction from noisy long reads

10.1186/s13059-021-02587-6 · 2022 · External reference

Mutations and evolution of the SARS-CoV-2 spike protein

10.3390/v14030640 · 2022 · External reference

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

10.1038/s41598-019-43524-9 · 2019 · External reference

MetaQUAST: Evaluation of metagenome assemblies

10.1093/bioinformatics/btv697 · 2016 · External reference

Using Tablet for visual exploration of second-generation sequencing data

10.1093/bib/bbs012 · 2013 · External reference

Accurate Haplotype Reconstruction from Long, Error-Prone, Reads with *HairSplitter*

10.24072/pci.mcb.100307 · 2024 · External reference

DESMAN: a new tool for de novo extraction of strains from metagenomes

10.1186/s13059-017-1309-9 · 2017 · External reference

Comparative genome analysis of Vagococcus fluvialis reveals abundance of mobile genetic elements in sponge-isolated strains

10.1186/s12864-022-08842-9 · 2022 · External reference

On-Site MinION Sequencing

10.1007/978-981-13-6037-4_10 · 2019 · External reference

Fast and accurate de novo genome assembly from long uncorrected reads

10.1101/gr.214270.116 · 2017 · External reference

Strainberry: automated strain separation in low-complexity metagenomes using long reads

10.1038/s41467-021-24515-9 · 2021 · External reference

New directions and interactions in metagenomics research

10.1111/j.1574-6941.2005.00055.x · 2006 · External reference

Badread: simulation of error-prone long reads

10.21105/joss.01316 · 2019 · External reference

Bandage: interactive visualization of <span class="italique">de novo</span> genome assemblies

10.1093/bioinformatics/btv383 · 2015 · External reference