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References from mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms. Local targets link to admitted publications; unresolved targets remain external evidence.
Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization
10.1016/j.scitotenv.2020.140948 · 2020 · External reference
Review and re-analysis of domain-specific 16S primers
10.1016/j.mimet.2003.08.009 · 2003 · External reference
Revisiting gene typing and phylogeny of Trypanosoma cruzi reference strains: Comparison of the relevance of mitochondrial DNA, single-copy nuclear DNA, and the intergenic region of mini-exon gene
10.1016/j.meegid.2023.105504 · 2023 · External reference
A DNA barcode for land plants
10.1073/pnas.0905845106 · 2009 · External reference
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
10.1073/pnas.1000080107 · 2010 · External reference
PhyloSift: phylogenetic analysis of genomes and metagenomes
10.7717/peerj.243 · 2014 · External reference
Detailed ecological associations of triatomines revealed by metabarcoding and next-generation sequencing: implications for triatomine behavior and Trypanosoma cruzi transmission cycles
10.1038/s41598-018-22455-x · 2018 · External reference
UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing
10.1101/081257 · 2016 · External reference
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
10.1111/1755-0998.13847 · 2023 · External reference
Biological identifications through DNA barcodes
10.1098/rspb.2002.2218 · 2003 · External reference
Counting animal species with DNA barcodes: Canadian insects
10.1098/rstb.2015.0333 · 2016 · External reference
Metabarcoding: A Powerful Yet Still Underestimated Approach for the Comprehensive Study of Vector-Borne Pathogen Transmission Cycles and Their Dynamics
10.5772/intechopen.89839 · 2020 · External reference
Using DNA meta barcoding to assess New Zealand's terrestrial biodiversity
10.20417/nzjecol.41.28 · 2017 · External reference
NCBI BLAST: a better web interface
10.1093/nar/gkn201 · 2008 · External reference
Two universal primer sets for species identification among vertebrates
10.1007/s00414-006-0113-y · 2006 · External reference
Candidate targets for Multilocus Sequence Typing of Trypanosoma cruzi: Validation using parasite stocks from the Chaco Region and a set of reference strains
10.1016/j.meegid.2011.12.008 · 2012 · External reference
DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity
10.1073/pnas.1424997112 · 2015 · External reference
Molecular Characterization of Four Mexican Isolates of Trypanosoma cruzi and Their Profile Susceptibility to Nifurtimox
10.1007/s11686-022-00608-3 · 2022 · External reference
Test data for mbctools
10.23708/w3todj · 2024 · External reference
Benchmarking bioinformatic tools for fast and accurate eDNA metabarcoding species identification
10.1111/1755-0998.13430 · 2021 · External reference
Fast and sensitive taxonomic classification for metagenomics with Kaiju
10.1038/ncomms11257 · 2016 · External reference
Disentangling Trypanosoma cruzi transmission cycle dynamics through the identification of blood meal sources of natural populations of Triatoma dimidiata in Yucatán, Mexico
10.1186/s13071-019-3819-7 · 2019 · External reference
Virion-Associated Nucleic Acid-Based Metagenomics: A Decade of Advances in Molecular Characterization of Plant Viruses
10.1094/phyto-03-22-0096-rvw · 2022 · External reference
One tool to metabarcode them all
10.24072/pci.genomics.100370 · 2024 · External reference
Comparative authentication of Hypericum perforatum herbal products using DNA metabarcoding, TLC and HPLC-MS
10.1038/s41598-017-01389-w · 2017 · External reference
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
10.1093/nar/gkr732 · 2011 · External reference
Novel polymerase chain reaction-restriction fragment length polymorphism assay to determine internal transcribed spacer-2 group in the Chagas disease vector, Triatoma dimidiata (Latreille, 1811)
10.1590/s0074-0276108042013001 · 2013 · External reference
VSEARCH: a versatile open source tool for metagenomics
10.7717/peerj.2584 · 2016 · External reference
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
10.1073/pnas.1117018109 · 2012 · External reference
metaXplor: an interactive viral and microbial metagenomic data manager
10.1093/gigascience/giab001 · 2021 · External reference
Towards next‐generation biodiversity assessment using DNA metabarcoding
10.1111/j.1365-294x.2012.05470.x · 2012 · External reference
Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
10.1016/j.biocon.2014.11.019 · 2015 · External reference
The FAIR Guiding Principles for scientific data management and stewardship
10.1038/sdata.2016.18 · 2016 · External reference
Improved metagenomic analysis with Kraken 2
10.1186/s13059-019-1891-0 · 2019 · External reference
metaXplor: mbctools data set
2024 · External reference
