Research graph
References from Sex-biased gene expression across tissues reveals unexpected differentiation in the gills of the threespine stickleback. Local targets link to admitted publications; unresolved targets remain external evidence.
HTSeq—a Python framework to work with high-throughput sequencing data
10.1093/bioinformatics/btu638 · 2014 · External reference
Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration
10.1038/nrg3366 · 2013 · External reference
Are all sex chromosomes created equal?
10.1016/j.tig.2011.05.005 · 2011 · External reference
The advantages of being red: sexual selection in the stickleback
10.1080/10236249309378870 · 1993 · External reference
Using RNA-seq to determine patterns of sex-bias in gene expression in the brain of the sex-role reversed Gulf Pipefish (Syngnathus scovelli)
10.1016/j.margen.2017.09.005 · 2018 · External reference
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference
Current Approach to Genetic Causes of Male Infertility and Genetic Counseling
10.18678/dtfd.1183283 · 2022 · External reference
BLAST+: architecture and applications
10.1186/1471-2105-10-421 · 2009 · External reference
Chapter 4 Growth Hormone Regulation in Fish
10.1016/s1546-5098(09)28004-6 · 2009 · External reference
The degeneration of Y chromosomes
10.1098/rstb.2000.0717 · 2000 · External reference
Depletion of energy reserves during reproductive aggression in male three-spined stickleback, Gasterosteus aculeatus L.
10.1111/j.1095-8649.1989.tb02982.x · 1989 · External reference
Annual variation in energy reserves in male three-spined stickleback, Gasterosteus aculeatm L. (Pisces, Gasterosteidae)
10.1111/j.1095-8649.1989.tb02976.x · 1989 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Interaction of nuclear ERs and GPER in vitellogenesis in zebrafish
10.1016/j.jsbmb.2019.01.013 · 2019 · External reference
Indian Hedgehog b Function Is Required for the Specification of Oligodendrocyte Progenitor Cells in the Zebrafish CNS
10.1523/jneurosci.3369-12.2013 · 2013 · External reference
Local expression of apolipoprotein A-I gene and a possible role for HDL in primary defence in the carp skin
10.1006/fsim.2002.0435 · 2003 · External reference
Sex-biased gene expression at single-cell resolution: cause and consequence of sexual dimorphism
10.1093/evlett/qrad013 · 2023 · External reference
Extreme heterogeneity in sex chromosome differentiation and dosage compensation in livebearers
10.1073/pnas.1905298116 · 2019 · External reference
Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences
10.1016/s0044-8486(02)00057-1 · 2002 · External reference
Dynamics of sex-biased gene expression during development in the stick insect Timema californicum
10.1038/s41437-022-00536-y · 2022 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2012 · External reference
Control of Transcriptional Repression of the Vitellogenin Receptor Gene in Largemouth Bass (Micropterus salmoides) by Select Estrogen Receptors Isotypes
10.1093/toxsci/kfu145 · 2014 · External reference
Age and size-related differences in reproductive success and reproductive costs in threespine sticklebacks (Gasterosteus aculeatus)
10.1093/beheco/1.2.140 · 1990 · External reference
Acid-sensing ion channels are involved in epithelial Na ⁺ uptake in the rainbow trout Oncorhynchus mykiss
10.1152/ajpcell.00398.2013 · 2014 · External reference
The evolution of sex-biased genes and sex-biased gene expression
10.1038/nrg2167 · 2007 · External reference
OrthoFinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
Molecular Characterization of Estrogen Receptors 1, 2a, and 2b and Their Tissue and Ontogenic Expression Profiles in Fathead Minnow (Pimephales promelas)
10.1095/biolreprod.105.039701 · 2005 · External reference
Hidden reproductive costs in the three-spined stickleback (Gasterosteus aculeatus)
1989 · External reference
The Reproductive Behavior of the Stickleback
10.1038/scientificamerican0493-80 · 1993 · External reference
Sexually selected color in male sticklebacks: a signal of both parasite exposure and parasite resistance
10.2307/3545863 · 1994 · External reference
Sex-biased gene expression in fish – a milestone
10.24072/pci.evolbiol.100800 · 2025 · External reference
Natural sex change in fish
10.1016/bs.ctdb.2018.12.014 · 2019 · External reference
Comparative Effects of Direct Cadmium Contamination on Gene Expression in Gills, Liver, Skeletal Muscles and Brain of the Zebrafish (Danio rerio)
10.1007/s10534-005-5670-x · 2006 · External reference
Evolution of steroid hormones in reproductive females of the threespine stickleback fish
10.1016/j.ygcen.2018.08.003 · 2018 · External reference
Gene content evolution on the X chromosome
10.1016/j.gde.2008.09.006 · 2008 · External reference
Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories
10.1371/journal.pone.0193009 · 2018 · External reference
The monocarboxylate transporter family—Structure and functional characterization
10.1002/iub.573 · 2012 · External reference
Multiplicity, Structures, and Endocrine and Exocrine Natures of Eel Fucose-binding Lectins
10.1074/jbc.m002337200 · 2000 · External reference
Energy reserves and reproductive investment in male three‐spined sticklebacks, Gasterosteus aculeatus
10.1034/j.1600-0633.2001.100206.x · 2001 · External reference
Gene-expression analysis of hair cell regeneration in the zebrafish lateral line
10.1073/pnas.1402898111 · 2014 · External reference
Predation cost of a sexual signal in the threespine stickleback
10.1093/beheco/arx080 · 2017 · External reference
Sex-biased dynamics of three-spined stickleback (Gasterosteus aculeatus) gene expression patterns
10.1016/j.ygeno.2021.12.010 · 2022 · External reference
Changes in behavior and brain immediate early gene expression in male threespined sticklebacks as they become fathers
10.1016/j.yhbeh.2017.11.002 · 2018 · External reference
Sex-Differences and Temporal Consistency in Stickleback Fish Boldness
10.1371/journal.pone.0081116 · 2013 · External reference
Reduction of sexual dimorphism in stream‐resident forms of three‐spined stickleback Gasterosteus aculeatus
10.1111/j.1095-8649.2011.03161.x · 2012 · External reference
Differences in the contributions of sex linkage and androgen regulation to sex‐biased gene expression in juvenile and adult sticklebacks
10.1111/jeb.13662 · 2020 · External reference
Sexual dimorphism in the external morphology of the threespine stickleback (Gasterosteus aculeatus)
10.1643/0045-8511(2007)7[336:sditem]2.0.co;2 · 2007 · External reference
GOATOOLS: A Python library for Gene Ontology analyses
10.1038/s41598-018-28948-z · 2018 · External reference
Diversity and Plasticity of Sex Determination and Differentiation in Fishes
10.1159/000342009 · 2013 · External reference
Extreme Sexual Brain Size Dimorphism in Sticklebacks: A Consequence of the Cognitive Challenges of Sex and Parenting?
10.1371/journal.pone.0030055 · 2012 · External reference
Sex-specific transcription and DNA methylation profiles of reproductive and epigenetic associated genes in the gonads and livers of breeding zebrafish
10.1016/j.cbpa.2018.04.004 · 2018 · External reference
Sexual dimorphism, sexual selection, and adaptation in polygenic characters
10.1111/j.1558-5646.1980.tb04817.x · 1980 · External reference
Female-Biased Expression on the X Chromosome as a Key Step in Sex Chromosome Evolution in Threespine Sticklebacks
10.1093/molbev/msq031 · 2010 · External reference
The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
DNA Methylation Difference between Female and Male Ussuri Catfish (Pseudobagrus ussuriensis) in Brain and Gonad Tissues
10.3390/life12060874 · 2022 · External reference
Exaggerated false positives by popular differential expression methods when analyzing human population samples
10.1186/s13059-022-02648-4 · 2022 · External reference
Sex-biased gene expression and recent sex chromosome turnover
10.1098/rstb.2020.0107 · 2021 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Matrix metalloproteinase-13 participates in neuroprotection and neurorepair after cerebral ischemia in mice
10.1016/j.nbd.2016.03.016 · 2016 · External reference
Sex chromosome dosage compensation: definitely not for everyone
10.1016/j.tig.2013.07.005 · 2013 · External reference
Some Inconvenient Truths About Sex Chromosome Dosage Compensation And The Potential Role Of Sexual Conflict
10.1111/j.1558-5646.2011.01316.x · 2011 · External reference
Pleiotropic Constraint Hampers the Resolution of Sexual Antagonism in Vertebrate Gene Expression
10.1086/523954 · 2008 · External reference
Hormonal Control of Male Reproductive Behaviour in Fishes: A Stickleback Perspective
10.1163/1568539042948141 · 2004 · External reference
Large Scale Gene Expression Meta-Analysis Reveals Tissue-Specific, Sex-Biased Gene Expression in Humans
10.3389/fgene.2016.00183 · 2016 · External reference
Effects of methomyl on steroidogenic gene transcription of the hypothalamic-pituitary-gonad-liver axis in male tilapia
10.1016/j.chemosphere.2016.09.024 · 2016 · External reference
Gene expression profiling of the long-term adaptive response to hypoxia in the gills of adult zebrafish
10.1152/ajpregu.00089.2005 · 2005 · External reference
Maternal stress has divergent effects on gene expression patterns in the brains of male and female threespine stickleback
10.1098/rspb.2016.1734 · 2016 · External reference
A review of infectious gill disease in marine salmonid fish: Infectious gill disease in salmonids
10.1111/j.1365-2761.2011.01251.x · 2011 · External reference
QuantSeq 3′ mRNA sequencing for RNA quantification
10.1038/nmeth.f.376 · 2014 · External reference
Distribution of estrogen receptor 2 mRNAs (Esr2a and Esr2b) in the brain and pituitary of the sea bass (Dicentrarchus labrax)
10.1016/j.brainres.2008.02.053 · 2008 · External reference
Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish
10.1101/gr.274282.120 · 2021 · External reference
Improved contiguity of the threespine stickleback genome using long-read sequencing
10.1093/g3journal/jkab007 · 2021 · External reference
Estrogen receptor function and regulation in fish and other vertebrates
10.1016/j.ygcen.2013.03.032 · 2013 · External reference
A serum fucose-binding lectin (DlFBL) from adult Dicentrarchus labrax is expressed in larva and juvenile tissues and contained in eggs
10.1007/s00441-010-1004-6 · 2010 · External reference
Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution
10.1186/s13059-020-02097-x · 2020 · External reference
Channels, pumps, and exchangers in the gill and kidney of freshwater fishes: Their role in ionic and acid‐base regulation
10.1002/jez.a.10309 · 2003 · External reference
GFF Utilities: GffRead and GffCompare
10.12688/f1000research.23297.1 · 2020 · External reference
Perchlorate disrupts embryonic androgen synthesis and reproductive development in threespine stickleback without changing whole-body levels of thyroid hormone
10.1016/j.ygcen.2014.10.015 · 2015 · External reference
Deep sexual dimorphism in adult medaka fish liver highlighted by multi-omic approach
10.1038/srep32459 · 2016 · External reference
Unresolved reference
2021 · External reference
Threespine Stickleback: A Model System For Evolutionary Genomics
10.1146/annurev-genom-111720-081402 · 2021 · External reference
Parasitism of asymmetrical pelvic phenotypes in stickleback
10.1139/z97-843 · 1997 · External reference
Ecological causes of sex-biased parasitism in threespine stickleback
10.1111/j.1095-8312.2001.tb01346.x · 2001 · External reference
Fish and chips: functional genomics of social plasticity in an African cichlid fish
10.1242/jeb.018242 · 2008 · External reference
Sex chromosomes and the evolution of sexual dimorphism
10.2307/2408385 · 1984 · External reference
Sex-biased gene expression across mammalian organ development and evolution
10.1126/science.adf1046 · 2023 · External reference
Unresolved reference
2010 · External reference
Comparison of Egg Envelope Thickness in Teleosts and its Relationship to the Sites of ZP Protein Synthesis
10.1002/jez.b.22729 · 2017 · External reference
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program
10.1016/j.jprot.2008.11.010 · 2009 · External reference
Spatial Dynamics of Evolving Dosage Compensation in a Young Sex Chromosome System
10.1093/gbe/evv013 · 2015 · External reference
Comparative gene expression profiles for highly similar aggressive phenotypes in male and female cichlid fishes (Julidochromis)
10.1242/jeb.055467 · 2011 · External reference
Changes in gene expression in gills of the euryhaline killifish Fundulus heteroclitus after abrupt salinity transfer
10.1152/ajpcell.00054.2004 · 2004 · External reference
Changes in kisspeptin, GnRH, and gonadotropin mRNA levels in male Threespine stickleback (Gasterosteus aculeatus) during photoperiod-induced sexual maturation
2019 · External reference
Sex-Specific Co-expression Networks and Sex-Biased Gene Expression in the Salmonid Brook Charr <span class="italique">Salvelinus fontinalis</span>
10.1534/g3.118.200910 · 2019 · External reference
FlorentSylvestre/Sex-biased_gene_expression_in_the_three_spined_stickleback:PREPRINT
10.5281/zenodo.11477976 · 2024 · External reference
The expression of the vitellogenin gene
10.1016/0092-8674(76)90047-7 · 1976 · External reference
Sex-Specific Splicing in Drosophila: Widespread Occurrence, Tissue Specificity and Evolutionary Conservation
10.1534/genetics.108.096743 · 2009 · External reference
UniProt: the Universal Protein Knowledgebase in 2023
10.1093/nar/gkac1052 · 2023 · External reference
Unresolved reference
1984 · External reference
The roles of sexual selection and sexual conflict in shaping patterns of genome and transcriptome variation
10.1038/s41559-023-02019-7 · 2023 · External reference
A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome
10.1093/gbe/evz240 · 2019 · External reference
Evolution on the X chromosome: unusual patterns and processes
10.1038/nrg1914 · 2006 · External reference
Sex-Biased Protein Expression in Threespine Stickleback, Gasterosteus aculeatus
10.1021/pr200234a · 2011 · External reference
Purifying Selection Maintains Dosage-Sensitive Genes during Degeneration of the Threespine Stickleback Y Chromosome
10.1093/molbev/msv078 · 2015 · External reference
The effects of bird predation on an estuarine stickleback (Pisces: Gasterosteidae) community
10.1139/z85-046 · 1985 · External reference
Sexual Dimorphism in Mammalian Autosomal Gene Regulation Is Determined Not Only by Sry but by Sex Chromosome Complement As Well
10.1016/j.devcel.2010.08.005 · 2010 · External reference
Unresolved reference
1976 · External reference
Indian hedgehog Is an Essential Component of Mechanotransduction Complex to Stimulate Chondrocyte Proliferation
10.1074/jbc.m101055200 · 2001 · External reference
Transcriptome profiling analysis of sex-based differentially expressed mRNAs and lncRNAs in the brains of mature zebrafish (Danio rerio)
10.1186/s12864-019-6197-9 · 2019 · External reference
