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References from Chromosome-level reference genome assembly for the mountain hare (Lepus timidus). Local targets link to admitted publications; unresolved targets remain external evidence.
FastQC: a quality control tool for high throughput sequence data
2010 · External reference
Mountain Hare Lepus timidus Linnaeus, 1758
10.1007/978-3-319-65038-8_12-1 · 2022 · External reference
Passage number effects in cell lines
2024 · External reference
Reconstruction of karyotype evolution in core Glires. I. The genome homology revealed by comparative chromosome painting
10.1007/s10577-011-9210-y · 2011 · External reference
Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation
10.1016/j.ymeth.2017.04.004 · 2017 · External reference
Unresolved reference
1837 · External reference
Why sequence all eukaryotes?
10.1073/pnas.2115636118 · 2022 · External reference
Niche overlap of mountain hare subspecies and the vulnerability of their ranges to invasion by the European hare; the (bad) luck of the Irish
10.1007/s10530-016-1330-z · 2017 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
10.1038/s41592-020-01056-5 · 2021 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy
10.1186/1471-2164-15-847 · 2014 · External reference
The Legacy of Recurrent Introgression during the Radiation of Hares
10.1093/sysbio/syaa088 · 2021 · External reference
RepeatModeler2 for automated genomic discovery of transposable element families
10.1073/pnas.1921046117 · 2020 · External reference
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs
10.1093/bioinformatics/btac460 · 2022 · External reference
Lagomorphs (rabbits, pikas and hares) do not use telomere-directed replicative aging in vitro
10.1016/j.mad.2005.01.003 · 2005 · External reference
Molecular phenotyping uncovers differences in basic housekeeping functions among closely related species of hares ( Lepus spp., Lagomorpha: Leporidae)
10.1111/mec.16755 · 2023 · External reference
Introgression drives repeated evolution of winter coat color polymorphism in hares
10.1073/pnas.1910471116 · 2019 · External reference
The evolutionary pathways for local adaptation in mountain hares
10.1111/mec.16338 · 2022 · External reference
Identifying and removing haplotypic duplication in primary genome assemblies
10.1093/bioinformatics/btaa025 · 2020 · External reference
Mitotic and meiotic chromosomes of the variable hare (Lepus timidus L.), the common hare (Lepus europaeus Pall.) and their hybrids
10.1111/j.1601-5223.1971.tb02355.x · 1972 · External reference
Chromosomal instability and its effect on cell lines
10.1002/cnr2.1822 · 2023 · External reference
Significantly improving the quality of genome assemblies through curation
10.1093/gigascience/giaa153 · 2021 · External reference
The recent expansion of the brown hare (Lepus europaeus) in Sweden with possible implications to the mountain hare (L. timidus)
10.1007/s10344-007-0086-2 · 2007 · External reference
Complete homology maps of the rabbit (Oryctolagus cuniculus) and human by reciprocal chromosome painting
10.1159/000015325 · 1999 · External reference
Standards recommendations for the Earth BioGenome Project
10.1073/pnas.2115639118 · 2022 · External reference
Widespread introgression of mountain hare genes into Fennoscandian brown hare populations
10.1371/journal.pone.0191790 · 2018 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
Systema naturæ per regna tria naturæ, secundum classes, ordines, genera, species, cum characteribus, differentiis, synonymis, locis (Vol. Tomus I. Editio decima, reformata.). p. 57. Holmiæ. (Salvius)
1758 · External reference
BUSCO: Assessing Genomic Data Quality and Beyond
10.1002/cpz1.323 · 2021 · External reference
An Annotated Draft Genome of the Mountain Hare (Lepus timidus)
10.1093/gbe/evz273 · 2020 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
10.1101/2023.09.25.559365 · 2023 · External reference
The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes
10.1111/j.1365-294x.2009.04221.x · 2009 · External reference
10.24072/pcjournal.393 · 2024 · Admitted local publication
Mountain- and brown hare genetic polymorphisms to survey local adaptations and conservation status of the heath hare (Lepus timidus sylvaticus, Nilsson 1831)
10.1038/s41597-022-01794-5 · 2022 · External reference
Versatile genome assembly evaluation with QUAST-LG
10.1093/bioinformatics/bty266 · 2018 · External reference
The genomic foundations of adaptation: evaluating the mountain hare
10.24072/pci.genomics.100377 · 2025 · External reference
Mo-Hare
1831 · External reference
Genomics in the Cloud: Using Docker, GATK, and WDL in Terra
2020 · External reference
Hybridization with mountain hares increases the functional allelic repertoire in brown hares
10.1038/s41598-021-95357-0 · 2021 · External reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
10.1038/s41467-020-14998-3 · 2020 · External reference
Alpine glacial relict species losing out to climate change: The case of the fragmented mountain hare population (Lepus timidus) in the Alps
10.1111/gcb.14087 · 2018 · External reference
European hare (Lepus europaeus) invasion ecology: implication for the conservation of the endemic Irish hare (Lepus timidus hibernicus)
10.1007/s10530-010-9849-x · 2011 · External reference
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
10.1186/s13059-020-02134-9 · 2020 · External reference
Purification of Nucleic Acids by Extraction with Phenol:Chloroform
10.1101/pdb.prot4455 · 2006 · External reference
RepeatMasker Open-4.0
2015 · External reference
Nonreceding hare lines: genetic continuity since the Late Pleistocene in European mountain hares (Lepus timidus)
10.1093/biolinnean/blw009 · 2017 · External reference
Species-specific variation in mitochondrial genome tandem repeat polymorphisms in hares (Lepus spp., Lagomorpha, Leporidae) provides insight into their evolution
10.1016/j.gene.2024.148644 · 2024 · External reference
The distribution of mountain hares Lepus timidus in Europe: a challenge from brown hares L. europaeus?
10.1046/j.1365-2907.2003.00008.x · 2003 · External reference
Hunting harvest data in Sweden indicate precipitous decline in the native mountain hare subspecies Lepus timidus sylvaticus (heath hare)
10.1016/j.jnc.2021.126069 · 2021 · External reference
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems
10.1109/ipdps.2019.00041 · 2019 · External reference
Genome size and GC-percent in vertebrates as determined by flow cytometry: The triangular relationship
10.1002/(sici)1097-0320(19980201)31:2<100::aid-cyto5>3.0.co;2-q · 1998 · External reference
GenomeScope: fast reference-free genome profiling from short reads
10.1093/bioinformatics/btx153 · 2017 · External reference
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
10.1038/s41587-019-0217-9 · 2019 · External reference
YaHS: yet another Hi-C scaffolding tool
10.1093/bioinformatics/btac808 · 2023 · External reference
Lack of phenological shift leads to increased camouflage mismatch in mountain hares
10.1098/rspb.2020.1786 · 2020 · External reference
High fitness costs of climate change‐induced camouflage mismatch
10.1111/ele.12568 · 2016 · External reference
