Research graph
References from Sequencing, de novo assembly of Ludwigia plastomes, and comparative analysis within the Onagraceae family. Local targets link to admitted publications; unresolved targets remain external evidence.
IRscope: an online program to visualize the junction sites of chloroplast genomes
10.1093/bioinformatics/bty220 · 2018 · External reference
Chloroplast genome draft assembly of Falcataria moluccana using hybrid sequencing technology
10.1186/s13104-023-06290-6 · 2023 · External reference
DNA barcoding, an effective tool for species identification: a review
10.1007/s11033-022-08015-7 · 2023 · External reference
SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
10.1089/cmb.2012.0021 · 2012 · External reference
Genomic relationships among diploid and polyploid species of the genus Ludwigia L. section Jussiaea using a combination of molecular cytogenetic, morphological, and crossing investigations
10.24072/pcjournal.364 · 2024 · External reference
Expression of matK: Functional and evolutionary implications
10.3732/ajb.94.8.1402 · 2007 · External reference
Whole plastomes are not enough: Phylogenomic and morphometric exploration at multiple demographic levels of the bee orchid clade Ophrys sect. Sphegodes
10.1093/jxb/eraa467 · 2021 · External reference
Evolution of the aquatic habit in Ludwigia (Onagraceae): Morpho-anatomical adaptive strategies in the Neotropics
10.1016/j.aquabot.2014.10.005 · 2015 · External reference
MISA-web: A web server for microsatellite prediction
10.1093/bioinformatics/btx198 · 2017 · External reference
Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
10.1038/s41477-018-0289-4 · 2018 · External reference
Tandem repeats finder: A program to analyze DNA sequences
10.1093/nar/27.2.573 · 1999 · External reference
Physiological and genetic responses of lentil (Lens culinaris) under flood stress
10.1016/j.stress.2023.100130 · 2023 · External reference
Aquatic and terrestrial morphotypes of the aquatic invasive plant, Ludwigia grandiflora, show distinct morphological and metabolomic responses
10.1002/ece3.3848 · 2018 · External reference
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
10.1101/gr.926603 · 2003 · External reference
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
10.1016/j.molp.2020.06.009 · 2020 · External reference
Chloroplast genomic comparison provides insights into the evolution of seagrasses
10.1186/s12870-023-04119-9 · 2023 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Informed and automated k-mer size selection for genome assembly
10.1093/bioinformatics/btt310 · 2014 · External reference
Two distinct plastid genome configurations and unprecedented intraspecies length variation in the accD coding region in Medicago truncatula
10.1093/dnares/dsu007 · 2014 · External reference
Ecological, Dynamic and Taxonomic Problems Due to Ludwigia (Onagraceae) in France
10.1007/s10750-005-4455-0 · 2005 · External reference
NOVOPlasty:<span class="italique">de novo</span>assembly of organelle genomes from whole genome data
10.1093/nar/gkw955 · 2017 · External reference
The two largest chloroplast genome‐encoded open reading frames of higher plants are essential genes
10.1046/j.1365-313x.2000.00722.x · 2000 · External reference
Reproductive Structures and Evolution in Ludwigia (Onagraceae). I. Androecium, Placentation, Merism
10.2307/2395261 · 1977 · External reference
Reproductive Structures and Evolution in Ludwigia (Onagraceae). III. Vasculature, Nectaries, Conclusions
10.2307/2398776 · 1981 · External reference
Comparison Analysis Based on Complete Chloroplast Genomes and Insights into Plastid Phylogenomic of Four <span class="italique">Iris</span> Species
10.1155/2022/2194021 · 2022 · External reference
An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome
10.1186/1471-2164-14-670 · 2013 · External reference
Horizontal Gene Transfer Involving Chloroplasts
10.3390/ijms22094484 · 2021 · External reference
VISTA: computational tools for comparative genomics
10.1093/nar/gkh458 · 2004 · External reference
Why Are Invasive Plants Successful?
10.1146/annurev-arplant-070522-071021 · 2023 · External reference
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
10.1093/nar/gkz238 · 2019 · External reference
Establishing research and management priorities for invasive water primroses (Ludwigia spp.)
2016 · External reference
Drought stress triggers proteomic changes involving lignin, flavonoids and fatty acids in tea plants
10.1038/s41598-020-72596-1 · 2020 · External reference
The plant mitochondrial genome: Dynamics and maintenance
10.1016/j.biochi.2013.09.016 · 2014 · External reference
Chloroplast Genomes of Two Species of Cypripedium: Expanded Genome Size and Proliferation of AT-Biased Repeat Sequences
10.3389/fpls.2021.609729 · 2021 · External reference
Two Distinct Plastid Genome Configurations and Unprecedented Intraspecies Length Variation in the accD Coding Region in Medicago truncatula
10.1093/dnares/dsu007 · 2014 · External reference
QUAST: Quality assessment tool for genome assemblies
10.1093/bioinformatics/btt086 · 2013 · External reference
RepEx: Repeat extractor for biological sequences
10.1016/j.ygeno.2013.07.005 · 2013 · External reference
Which adaptations of some invasive Ludwigia spp. (Rosidae, Onagraceae) populations occur in contrasting hydrological conditions in Western France?
10.1007/s10750-014-1815-7 · 2014 · External reference
The correct name for a section of Ludwigia L. (Onagraceae)
10.3897/phytokeys.50.4887 · 2015 · External reference
Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly
10.1186/s13059-020-02244-4 · 2021 · External reference
Occurrence of Plastids in the Sperm Cells of Caprifoliaceae: Biparental Plastid Inheritance in Angiosperms is Unilaterally Derived from Maternal Inheritance
10.1093/pcp/pcn069 · 2008 · External reference
Development of high transferability cp<scp>SSR</scp> markers for individual identification and genetic investigation in Cupressaceae species
10.1002/ece3.4053 · 2018 · External reference
From weed biology to successful control: an example of successful management of <span class="italique">Ludwigia grandiflora</span> in Germany
10.1111/wre.12224 · 2016 · External reference
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
10.1101/gr.214346.116 · 2017 · External reference
Nanopore sequencing and assembly of a human genome with ultra-long reads
10.1038/nbt.4060 · 2018 · External reference
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
10.1186/s13059-020-02154-5 · 2020 · External reference
Oenothera, Cytogenetics and Evolution
10.2307/4108389 · 1974 · External reference
Residual effects of cultivation methods on weed seed banks and weeds in Cambodia
10.1111/wbm.12097 · 2016 · External reference
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
10.1093/nar/gkf436 · 2002 · External reference
A Ycf2-FtsHi Heteromeric AAA-ATPase Complex Is Required for Chloroplast Protein Import
10.1105/tpc.18.00357 · 2018 · External reference
The tobacco plastid <span class="italique">acc</span>D gene is essential and is required for leaf development
10.1111/j.1365-313x.2005.02533.x · 2005 · External reference
Assembly of long, error-prone reads using repeat graphs
10.1038/s41587-019-0072-8 · 2019 · External reference
Compartmentalization of two forms of acetyl-CoA carboxylase in plants and the origin of their tolerance toward herbicides.
10.1073/pnas.91.9.3598 · 1994 · External reference
Canu: scalable and accurate long-read assembly via adaptive<span class="italique">k</span>-mer weighting and repeat separation
10.1101/gr.215087.116 · 2017 · External reference
Mmicular mechanisms of cytochrome <span class="italique">c</span> biogenesis: three distinct systems
10.1046/j.1365-2958.1998.00869.x · 1998 · External reference
Relationships between the biomass production of invasive Ludwigia species and physical properties of habitats in France
10.1007/s10750-010-0440-3 · 2010 · External reference
GB2sequin - A file converter preparing custom GenBank files for database submission
10.1016/j.ygeno.2018.05.003 · 2019 · External reference
Exploration of genetic, morphological and essential oil variation reveals tools for the authentication and breeding of Salvia pomifera subsp. calycina (Sm.) Hayek
10.1016/j.phytochem.2021.112900 · 2021 · External reference
Paraphyly in Tribe Onagreae: Insights into Phylogenetic Relationships of Onagraceae Based on Nuclear and Chloroplast Sequence Data
10.1600/036364404772974293 · 2004 · External reference
Family‐level relationships of Onagraceae based on chloroplast <span class="italique">rbc</span><span class="italique">L</span> and <span class="italique">ndh</span><span class="italique">F</span> data
10.3732/ajb.90.1.107 · 2003 · External reference
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
10.1016/j.ymeth.2016.02.020 · 2016 · External reference
The Repeat Sequences and Elevated Substitution Rates of the Chloroplast accD Gene in Cupressophytes
10.3389/fpls.2018.00533 · 2018 · External reference
Removal effects of aquatic plants on high-concentration phosphorus in wastewater during summer
10.1016/j.jenvman.2022.116434 · 2022 · External reference
Comparative Analyses of Plastomes of Four Anubias (Araceae) Taxa, Tropical Aquatic Plants Endemic to Africa
10.3390/genes13112043 · 2022 · External reference
Comparative analysis of chloroplast genomes reveals phylogenetic relationships and intraspecific variation in the medicinal plant Isodon rubescens
10.1371/journal.pone.0266546 · 2022 · External reference
The Use of Long-Read Sequencing to Study the Phylogenetic Diversity of the Potato Varieties Plastome of the Ural Selection
10.3390/agronomy12040846 · 2022 · External reference
Comparative analysis of chloroplast genomes in Vasconcellea pubescens A.DC. and Carica papaya L.
10.1038/s41598-020-72769-y · 2020 · External reference
Complete plastome sequence of ludwigia octovalvis (Onagraceae), a globally distributed wetland plant
10.1128/genomea.01274-16 · 2016 · External reference
New insights into polyploid evolution and dynamic nature of Ludwigia section Isnardia (Onagraceae)
10.1186/s40529-023-00387-8 · 2023 · External reference
Multi‐locus phylogeny of Ludwigia (Onagraceae): Insights on infra‐ generic relationships and the current classification of the genus
10.12705/665.7 · 2017 · External reference
Disentangling Reticulate Evolution of North Temperate Haplostemonous Ludwigia (Onagraceae)
10.3417/2020479 · 2020 · External reference
Comparative Analysis of Complete Chloroplast Genomes of 13 Species in Epilobium, Circaea, and Chamaenerion and Insights Into Phylogenetic Relationships of Onagraceae
10.3389/fgene.2021.730495 · 2021 · External reference
Chloroplast Transformation with Modified accD Operon Increases Acetyl-CoA Carboxylase and Causes Extension of Leaf Longevity and Increase in Seed Yield in Tobacco
10.1093/pcp/pcf172 · 2002 · External reference
Chloroplast genome analysis of Angiosperms and phylogenetic relationships among Lamiaceae members with particular reference to teak (Tectona grandis L.f)
10.1007/s12038-021-00166-2 · 2021 · External reference
Representation and participation across 20 years of plant genome sequencing
10.1038/s41477-021-01031-8 · 2021 · External reference
Gene Loss and Evolution of the Plastome
10.3390/genes11101133 · 2020 · External reference
Getting the Right Traits: Reproductive and Dispersal Characteristics Predict the Invasiveness of Herbaceous Plant Species
10.1371/journal.pone.0123634 · 2015 · External reference
A haplotype resolved chromosomal level avocado genome allows analysis of novel avocado genes
10.1093/hr/uhac157 · 2022 · External reference
Observations on the Ludwigia uruguayensis complex (Onagraceae) in the United States
2000 · External reference
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
10.1186/1471-2164-14-s1-s7 · 2013 · External reference
The linear plastid chromosomes of maize: terminal sequences, structures, and implications for DNA replication
10.1007/s00294-015-0548-0 · 2016 · External reference
trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data
10.1038/s41592-019-0430-y · 2019 · External reference
DNA Extraction Protocols for Whole-Genome Sequencing in Marine Organisms
10.1007/978-1-4939-3774-5_2 · 2016 · External reference
RStudio: Integrated Development Environment for R
2015 · External reference
From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy
10.1186/s13059-018-1462-9 · 2018 · External reference
The Old World species of Ludwigia including Jussia
1963 · External reference
Observations of Chromosomes in Ludwigia (Onagraceae)
10.2307/2398926 · 1979 · External reference
Biological control of invasive water primroses, Ludwigia spp., in the United States: A feasibility assessment
10.57257/japm-20215967 · 2021 · External reference
Horizontal gene transfer in plants
10.1093/jxb/erl148 · 2006 · External reference
DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.
10.1093/bioinformatics/15.2.174 · 1999 · External reference
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
10.1093/molbev/msx248 · 2017 · External reference
Onagre, monster, invasion and genetics.
10.1101/2023.10.20.563230 · 2025 · External reference
Are Cyanobacteria an Ancestor of Chloroplasts or Just One of the Gene Donors for Plants and Algae?
10.3390/genes12060823 · 2021 · External reference
Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing
10.1371/journal.pone.0226234 · 2020 · External reference
Plastid inheritance in Epilobium
10.1007/bf00389419 · 1986 · External reference
Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease Complex
10.1105/tpc.18.00121 · 2018 · External reference
ABySS: A parallel assembler for short read sequence data
10.1101/gr.089532.108 · 2009 · External reference
Chloroplast DNA Diversity of Tunisian Barley Landraces as Revealed by cpSSRs Molecular Markers and Implication for Conservation Strategies
10.1155/2022/3905957 · 2022 · External reference
Ludwigia stolonifera , insight into its phenotypic plasticity, habitat diversity and associated species
10.21608/ejbo.2018.5268.1217 · 2018 · External reference
Development of chloroplast simple sequence repeats (cpSSRs) for the intraspecific study of Gracilaria tenuistipitata (Gracilariales, Rhodophyta) from different populations
10.1186/1756-0500-7-77 · 2014 · External reference
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
10.1093/bioinformatics/btu033 · 2014 · External reference
GeSeq – versatile and accurate annotation of organelle genomes
10.1093/nar/gkx391 · 2017 · External reference
What can we do with 1000 plastid genomes?
10.1111/tpj.13491 · 2017 · External reference
Strategies for complete plastid genome sequencing
10.1111/1755-0998.12626 · 2017 · External reference
YCF1: A Green TIC?
10.1105/tpc.114.135541 · 2015 · External reference
Revised classification of the Onagraceae
2007 · External reference
Long-reads reveal that the chloroplast genome exists in two distinct versions in most plants
10.1093/gbe/evz256 · 2019 · External reference
Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
10.1186/s12864-018-5348-8 · 2018 · External reference
Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae
10.1186/s12870-023-04074-5 · 2023 · External reference
A review of the prevalence, utility, and caveats of using chloroplast simple sequence repeats for studies of plant biology
10.3732/apps.1400059 · 2014 · External reference
Bandage: interactive visualization of <span class="italique">de novo</span> genome assemblies
10.1093/bioinformatics/btv383 · 2015 · External reference
Extensive genomic rearrangements mediated by repetitive sequences in plastomes of Medicago and its relatives
10.1186/s12870-021-03202-3 · 2021 · External reference
Analysis of six chloroplast genomes provides insight into the evolution of Chrysosplenium (Saxifragaceae)
10.1186/s12864-020-07045-4 · 2020 · External reference
The Plastid-encoded ccsA Gene Is Required for Heme Attachment to Chloroplast c-type Cytochromes
10.1074/jbc.271.9.4632 · 1996 · External reference
The plastid-encoded protein Orf2971 is required for protein translocation and chloroplast quality control
10.1093/plcell/koac180 · 2022 · External reference
Comparing and phylogenetic analysis chloroplast genome of three Achyranthes species
10.1038/s41598-020-67679-y · 2020 · External reference
Chloroplast genomes of four Carex species: Long repetitive sequences trigger dramatic changes in chloroplast genome structure
10.3389/fpls.2023.1100876 · 2023 · External reference
A New Section of Ludwigia (Onagraceae) with a Key to the Sections of the Genus
10.2307/2419486 · 1992 · External reference
Comparative genome sequence and phylogenetic analysis of chloroplast for evolutionary relationship among Pinus species
10.1016/j.sjbs.2021.10.070 · 2022 · External reference
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
10.1101/gr.074492.107 · 2008 · External reference
Why does biparental plastid inheritance revive in angiosperms?
10.1007/s10265-009-0291-z · 2010 · External reference
Comparative analysis of chloroplast genome structure and molecular dating in Myrtales
10.1186/s12870-021-02985-9 · 2021 · External reference
The Complete Chloroplast Genome Sequences of Five Epimedium Species: Lights into Phylogenetic and Taxonomic Analyses
10.3389/fpls.2016.00306 · 2016 · External reference
The complete chloroplast genome of the Jerusalem artichoke (<span class="italique">Helianthus tuberosus</span> L.) and an adaptive evolutionary analysis of the <span class="italique">ycf2</span> gene
10.7717/peerj.7596 · 2019 · External reference
10.26182/5f333d9ac2bee
10.26182/5f333d9ac2bee · 2020 · External reference
