Research graph
References from Detection of domestication signals through the analysis of the full distribution of fitness effects. Local targets link to admitted publications; unresolved targets remain external evidence.
The Domestication Makeup: Evolution, Survival, and Challenges
10.3389/fevo.2020.00103 · 2020 · External reference
A Genomic Perspective on Wild Boar Demography and Evolution
10.1017/9781316941232.036 · 2017 · External reference
Software Distribution. Computer software. Vers. 2-2.4.0.
2016 · External reference
Genetics of Animal Domestication
10.1017/cbo9781139019514.014 · 2012 · External reference
Genomic inference of complex domestication histories in three Solanaceae species
10.1111/jeb.13723 · 2021 · External reference
Wild emmer genome architecture and diversity elucidate wheat evolution and domestication
10.1126/science.aan0032 · 2017 · External reference
New Methods for Inferring the Distribution of Fitness Effects for INDELs and SNPs
10.1093/molbev/msy054 · 2018 · External reference
Recent demography drives changes in linked selection across the maize genome
10.1038/nplants.2016.84 · 2016 · External reference
Inferring Parameters of the Distribution of Fitness Effects of New Mutations When Beneficial Mutations Are Strongly Advantageous and Rare
10.1534/g3.120.401052 · 2020 · External reference
Complex population structure in African village dogs and its implications for inferring dog domestication history
10.1073/pnas.0902129106 · 2009 · External reference
Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
10.1371/journal.pgen.1000083 · 2008 · External reference
Genome-wide patterns of nucleotide polymorphism in domesticated rice
10.1371/journal.pgen.0030163 · 2007 · External reference
Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits
10.1111/age.12299 · 2015 · External reference
Domestication-DFE-PCI
10.5281/zenodo.15084050 · 2025 · External reference
Comparison of the Full Distribution of Fitness Effects of New Amino Acid Mutations Across Great Apes
10.1534/genetics.119.302494 · 2019 · External reference
The effect of deleterious mutations on neutral molecular variation
10.1093/genetics/134.4.1289 · 1993 · External reference
The pattern of neutral molecular variation under the background selection model
10.1093/genetics/141.4.1619 · 1995 · External reference
Computationally Efficient Composite Likelihood Statistics for Demographic Inference
10.1093/molbev/msv255 · 2016 · External reference
Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies
10.1098/rstb.2016.0471 · 2017 · External reference
The coding loci of evolution and domestication: current knowledge and implications for bio-inspired genome editing
10.1242/jeb.208934 · 2020 · External reference
Efficiency of truncation selection
10.1073/pnas.76.1.396 · 1979 · External reference
Hill-Robertson interference may bias the inference of fitness effects of new mutations in highly selfing species
10.1101/2024.02.06.579142 · 2024 · External reference
Early Domesticated Dogs of the Near East
10.1006/jasc.1994.1062 · 1994 · External reference
From wild animals to domestic pets, an evolutionary view of domestication
10.1073/pnas.0901586106 · 2009 · External reference
The consequences of not accounting for background selection in demographic inference
10.1111/mec.13390 · 2016 · External reference
Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes
10.1038/ng.3394 · 2015 · External reference
How the analysis of the distribution of fitness effects can reveal novel insights onto the genetics of domestication
10.24072/pci.evolbiol.100795 · 2025 · External reference
Adaptive Protein Evolution in Animals and the Effective Population Size Hypothesis
10.1371/journal.pgen.1005774 · 2016 · External reference
The distribution of mutational effects on fitness in Caenorhabditis elegans inferred from standing genetic variation
10.1093/genetics/iyab166 · 2022 · External reference
Genetic drift in an infinite population. The pseudohitchhiking model.
10.1093/genetics/155.2.909 · 2000 · External reference
Genotyping strategies of selection candidates in livestock breeding programmes
10.1111/jbg.12381 · 2019 · External reference
Analyses of pig genomes provide insight into porcine demography and evolution
10.1038/nature11622 · 2012 · External reference
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
10.1371/journal.pgen.1000695 · 2009 · External reference
SLiM 4: Multispecies Eco-Evolutionary Modeling
10.1086/723601 · 2023 · External reference
Inferring Genome-Wide Correlations of Mutation Fitness Effects between Populations
10.1093/molbev/msab162 · 2021 · External reference
A map of rice genome variation reveals the origin of cultivated rice
10.1038/nature11532 · 2012 · External reference
Rapid Adaptation of a Polygenic Trait After a Sudden Environmental Shift
10.1534/genetics.116.196972 · 2017 · External reference
Modes of Rapid Polygenic Adaptation
10.1093/molbev/msx240 · 2017 · External reference
Pleiotropic consequences of adaptation across gradations of environmental stress in budding yeast
10.48550/arxiv.1409.7839 · 2014 · External reference
The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects
10.1093/molbev/msab050 · 2021 · External reference
Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies
10.1534/genetics.107.080663 · 2007 · External reference
Inference of the Distribution of Selection Coefficients for New Nonsynonymous Mutations Using Large Samples
10.1534/genetics.116.197145 · 2017 · External reference
Deleterious mutations and the evolution of sexual reproduction
10.1038/336435a0 · 1988 · External reference
A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig
10.1038/nature02064 · 2003 · External reference
A population genetics view of animal domestication
10.1016/j.tig.2013.01.003 · 2013 · External reference
Current perspectives and the future of domestication studies
10.1073/pnas.1323964111 · 2014 · External reference
Pervasive selection pressure in wild and domestic pigs
10.1101/2020.09.09.289439 · 2022 · External reference
Control of grain size in rice
10.1007/s00497-018-0333-6 · 2018 · External reference
Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits
10.1038/s41467-020-16485-1 · 2020 · External reference
The origins and spread of domestic horses from the Western Eurasian steppes
10.1038/s41586-021-04018-9 · 2021 · External reference
Comparative evolutionary genetics of deleterious load in sorghum and maize
10.1038/s41477-020-00834-5 · 2021 · External reference
The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication
10.1016/j.tig.2006.01.004 · 2006 · External reference
Effect of genomic selection on rate of inbreeding and coancestry and effective population size of Holstein and Jersey cattle populations
10.3168/jds.2019-18013 · 2020 · External reference
Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs
10.1073/pnas.1512501113 · 2016 · External reference
Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection
10.1093/molbev/msae118 · 2024 · External reference
Frequent adaptation and the McDonald-Kreitman test
10.1073/pnas.1220835110 · 2013 · External reference
Demographic reconstruction of the Western sheep expansion from whole-genome sequences
10.1093/g3journal/jkad199 · 2023 · External reference
Genetic Costs of Domestication and Improvement
10.1093/jhered/esx069 · 2018 · External reference
Cattle demographic history modelled from autosomal sequence variation
10.1098/rstb.2010.0103 · 2010 · External reference
Distortions in genealogies due to purifying selection and recombination
10.1534/genetics.113.152983 · 2013 · External reference
Molecular signatures of natural selection
10.1146/annurev.genet.39.073003.112420 · 2005 · External reference
The mutational load of a multigene family with uniform members
10.1017/s0016672300028020 · 1989 · External reference
Generation length for mammals
10.3897/natureconservation.5.5734 · 2013 · External reference
The nature of selection during plant domestication
10.1038/nature07895 · 2009 · External reference
Genetics of adaptation in modern chicken
10.1371/journal.pgen.1007989 · 2019 · External reference
Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations
10.1534/genetics.115.184812 · 2016 · External reference
Spyder-documentation
2009 · External reference
The Pig and the Chicken in the Middle East: Modeling Human Subsistence Behavior in the Archaeological Record Using Historical and Animal Husbandry Data
10.1007/s10814-015-9083-2 · 2015 · External reference
Python 3 Reference Manual: (Python Documentation Manual Part 2)
2009 · External reference
Whole-genome resequencing reveals loci under selection during chicken domestication
10.1038/nature08832 · 2010 · External reference
Effects of Linked Selective Sweeps on Demographic Inference and Model Selection
10.1534/genetics.116.190223 · 2016 · External reference
Deletion in a gene associated with grain size increased yields during rice domestication
10.1038/ng.169 · 2008 · External reference
Polygenic Adaptation in a Population of Finite Size
10.3390/e22080907 · 2020 · External reference
polyDFEv2.0: testing for invariance of the distribution of fitness effects within and across species
10.1093/bioinformatics/bty1060 · 2019 · External reference
Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data
10.1534/genetics.117.300323 · 2017 · External reference
The genomic history and global expansion of domestic donkeys
10.1126/science.abo3503 · 2022 · External reference
The Temporal Dynamics of Background Selection in Nonequilibrium Populations
10.1534/genetics.119.302892 · 2020 · External reference
On the number of segregating sites in genetical models without recombination
10.1016/0040-5809(75)90020-9 · 1975 · External reference
The effects of artificial selection on the maize genome
10.1126/science.1107891 · 2005 · External reference
Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments
10.1093/molbev/msw129 · 2016 · External reference
The Domestication of Animals
10.3998/jar.0521004.0068.201 · 2012 · External reference
Core questions in domestication research
10.1073/pnas.1501711112 · 2015 · External reference
Documenting domestication: the intersection of genetics and archaeology
10.1016/j.tig.2006.01.007 · 2006 · External reference
The Joint Effects of Background Selection and Genetic Recombination on Local Gene Genealogies
10.1534/genetics.111.130575 · 2011 · External reference
