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References from Alignment-free detection and seed-based identification of multi-loci V(D)J recombinations in Vidjil-algo. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
2021 · External reference
Systematic comparative study of computational methods for T-cell receptor sequencing data analysis
10.1093/bib/bbx111 · 2019 · External reference
Efficient string matching: An aid to bibliographic search
10.1145/360825.360855 · 1975 · External reference
High-Resolution Description of Antibody Heavy-Chain Repertoires in Humans
10.1371/journal.pone.0022365 · 2011 · External reference
Rep-Seq: uncovering the immunological repertoire through next-generation sequencing
10.1111/j.1365-2567.2011.03527.x · 2012 · External reference
MiXCR: software for comprehensive adaptive immunity profiling
10.1038/nmeth.3364 · 2015 · External reference
MiTCR: software for T-cell receptor sequencing data analysis
10.1038/nmeth.2555 · 2013 · External reference
Bioinformatics Algorithms: Techniques and Applications
10.1002/9780470253441.ch6 · 2008 · External reference
Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study
10.1038/s41375-019-0496-7 · 2019 · External reference
Clinical significance of minimal residual disease in childhood acute lymphoblastic leukemia
10.1056/nejm199808273390904 · 1998 · External reference
Aligning two sequences within a specified diagonal band
10.1093/bioinformatics/8.5.481 · 1992 · External reference
Vidjil: A web platform for analysis of high-throughput repertoire sequencing
10.1371/journal.pone.0166126 · 2016 · External reference
Petabase-scale sequence alignment catalyses viral discovery
10.1038/s41586-021-04332-2 · 2022 · External reference
Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing
10.1186/1471-2164-15-409 · 2014 · External reference
IMGT, the international ImMunoGeneTics database: a new design for immunogenetics data access
10.3233/978-1-60750-896-0-351 · 1998 · External reference
IMGT/LIGM-DB, the IMGT® comprehensive database of immunoglobulin and T cell receptor nucleotide sequences
10.1093/nar/gkj088 · 2006 · External reference
Unresolved reference
2004 · External reference
IMSEQ – a fast and error aware approach to immunogenetic sequence analysis
10.1093/bioinformatics/btv309 · 2015 · External reference
Snakemake—a scalable bioinformatics workflow engine
10.1093/bioinformatics/bts480 · 2012 · External reference
Immunoglobulin Gene Mutational Status Assessment by Next Generation Sequencing in Chronic Lymphocytic Leukemia
10.1007/978-1-0716-2115-8_10 · 2022 · External reference
IMGT, the International ImMunoGeneTics Information System
10.1101/pdb.top115 · 2011 · External reference
High-throughput immune repertoire analysis with IGoR
10.1038/s41467-018-02832-w · 2018 · External reference
An accelerated Vidjil algorithm: up to 30X faster identification of V(D)J recombinations via spaced seeds and Aho-Corasick pattern matching
10.24072/pci.mcb.100268 · 2024 · External reference
Consistency of VDJ Rearrangement and Substitution Parameters Enables Accurate B Cell Receptor Sequence Annotation
10.1371/journal.pcbi.1004409 · 2016 · External reference
A Dataset of Sequences with Manually Curated V(D)J Designations
2016 · External reference
Reconstructing antibody repertoires from error-prone immunosequencing reads
10.4049/jimmunol.1700485 · 2017 · External reference
Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine
10.1093/bioinformatics/btt004 · 2013 · External reference
Somatic generation of antibody diversity
10.1038/302575a0 · 1983 · External reference
One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic Leukemia
10.1007/978-1-0716-2115-8_3 · 2022 · External reference
TCRklass: A New K-String-Based Algorithm for Human and Mouse TCR Repertoire Characterization.
10.4049/jimmunol.1400711 · 2014 · External reference
IgBLAST: an immunoglobulin variable domain sequence analysis tool
10.1093/nar/gkt382 · 2013 · External reference
