Research graph
References from Pipeline to detect the positional and directional relationship between transposable elements and adjacent genes in host genome. Local targets link to admitted publications; unresolved targets remain external evidence.
Transposable elements contribute to dynamic genome content in maize
10.1111/tpj.14489 · 2019 · External reference
LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq
10.1093/bioinformatics/btz130 · 2019 · External reference
A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea
10.1186/s12864-018-4763-1 · 2018 · External reference
LTR Retrotransposons as Controlling Elements of Genome Response to Stress?
10.1007/978-3-642-31842-9_14 · 2012 · External reference
GREAM: A Web Server to Short-List Potentially Important Genomic Repeat Elements Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as the Gene Neighborhoods, within or across 17 Mammalian Species
10.1371/journal.pone.0133647 · 2015 · External reference
Regulation of rice root development by a retrotransposon acting as a microRNA sponge
10.7554/elife.30038 · 2017 · External reference
Roles of Transposable Elements in the Different Layers of Gene Expression Regulation
10.3390/ijms20225755 · 2019 · External reference
LTRpred: de novo annotation of intact retrotransposons
10.21105/joss.02170 · 2020 · External reference
Considering Transposable Element Diversification in De Novo Annotation Approaches
10.1371/journal.pone.0016526 · 2011 · External reference
Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
10.1371/journal.pgen.1002384 · 2011 · External reference
Unresolved reference
External reference
Transposable elements in cancer as a by-product of stress-induced evolvability
10.3389/fgene.2014.00156 · 2014 · External reference
A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity
10.1016/j.cell.2018.05.043 · 2018 · External reference
LINE-2 transposable elements are a source of functional human microRNAs and target sites
10.1371/journal.pgen.1008036 · 2019 · External reference
Combined Evidence Annotation of Transposable Elements in Genome Sequences
10.1371/journal.pcbi.0010022 · 2005 · External reference
Transposable elements and the epigenetic regulation of the genome
10.1038/nrg2072 · 2007 · External reference
The Evolutionary Dynamics of Transposable Elements in Eukaryote Genomes
10.1159/000337126 · 2012 · External reference
