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References from Implications of high throughput sequencing of plant viruses in biosecurity – a decade of progress?. Local targets link to admitted publications; unresolved targets remain external evidence.
The impact of high throughput sequencing on plant health diagnostics
10.1007/s10658-018-1570-0 · 2018 · External reference
Next‐generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology
10.1111/j.1364-3703.2009.00545.x · 2009 · External reference
Carrot yellow leaf virus is associated with carrot internal necrosis
10.1371/journal.pone.0109125 · 2014 · External reference
Revision of family Betaflexiviridae, order Tymovirales
2015 · External reference
Author Correction: Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
10.1038/s41587-023-01952-z · 2023 · External reference
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
10.1038/s41587-023-01844-2 · 2023 · External reference
Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus
10.1016/j.virol.2009.02.028 · 2009 · External reference
Evidence that an unnamed isometric virus associated with potato rugose disease in Peru is a new species of torradovirus
10.1094/phyto-11-22-0449-v · 2023 · External reference
Phytopathogenic fungus hosts a plant virus: A naturally occurring cross-kingdom viral infection
10.1073/pnas.1714916114 · 2017 · External reference
Viromics and infectivity analysis reveal the release of infective plant viruses from wastewater into the environment
10.1016/j.watres.2020.115628 · 2020 · External reference
Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale
10.1038/ismej.2017.155 · 2018 · External reference
Symptomatic, widespread, and inconspicuous: new detection of tomato fruit blotch virus
10.36253/phyto-14463 · 2023 · External reference
Distribution, host range, properties and purification of cassava latent virus, a geminivirus
10.1111/j.1744-7348.1978.tb02644.x · 1978 · External reference
Virtool: Viral infection diagnostics using next-generation sequencing
2020 · External reference
Scientific Opinion on the pest categorisation of non-EU viruses and viroids of Cydonia Mill., Malus Mill. and Pyrus L.
10.2903/j.efsa.2019.5590 · 2019 · External reference
Scientific Opinion on the pest categorisation of non-EU viruses of Fragaria L..
10.2903/j.efsa.2019.5766 · 2019 · External reference
The CARE principles for indigenous data governance
10.5334/dsj-2020-043 · 2020 · External reference
A global surveillance system for crop diseases
10.1126/science.aaw1572 · 2019 · External reference
Unresolved reference
2022 · External reference
A new ilarvirus isolated from Viola× wittrockiana and its detection in pansy germoplasm by qRT-PCR
10.1007/s00705-013-1837-x · 2014 · External reference
Deep sequencing analysis of viruses infecting grapevines: virome of a vineyard
10.1016/j.virol.2010.01.023. · 2010 · External reference
Establishing a provisional list of high risk plants, plant products or other objects, within the meaning of Article 42 of Regulation (EU) 2016/2031 and a list of plants for which phytosanitary certificates are not required for introduction into the Union, within the meaning of Article 73 of that Regulation
2018 · External reference
Characterisation of cauliflower mosaic virus DNA sequences which encode major polyadenylated transcripts
10.1093/nar/9.24.6735 · 1981 · External reference
New Virus Diagnostic Approaches to Ensuring the Ongoing Plant Biosecurity of Aotearoa New Zealand
10.3390/v15020418 · 2023 · External reference
Petabase-scale sequence alignment catalyses viral discovery
10.1038/s41586-021-04332-2 · 2022 · External reference
EFSA Plant Pest Survey Toolkit: Pest survey cards by taxonomic group
2025 · External reference
Why a strategic shift in action is needed to recognise and empower Indigenous plant pathology knowledge and research
10.1007/s13313-024-00977-5 · 2024 · External reference
Analysis of the Spatial Dispersion of Tomato Brown Rugose Fruit Virus on Surfaces in a Commercial Tomato Production Site
10.3390/horticulturae9050611 · 2023 · External reference
PM 7/76 (5) Use of EPPO Diagnostic Standards
10.1111/epp.12506 · 2018 · External reference
PM 7/98 (3) Specific requirements for laboratories preparing accreditation for a plant pest diagnostic activity
10.1111/epp.12508 · 2018 · External reference
PM 7/151 (1) Considerations for the use of high throughput sequencing in plant health diagnostics
10.1111/epp.12884 · 2022 · External reference
Begomovirus
2024 · External reference
Project 2020-G-246
2020 · External reference
Virome characterization of a European pear germplasm collection
2024 · External reference
Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis
10.3389/fmicb.2023.1181562 · 2023 · External reference
Hybrids of RNA viruses and viroid-like elements replicate in fungi
10.1038/s41467-023-38301-2 · 2023 · External reference
Integrating High throughput Sequencing into Survey Design Reveals Turnip Yellows Virus and Soybean Dwarf Virus in Pea (Pisum Sativum) in the United Kingdom
10.3390/v13122530 · 2021 · External reference
Reconsidering causal association in plant virology
10.1111/ppa.13199 · 2020 · External reference
Implications of high throughput sequencing of plant viruses in biosecurity – a decade of progress?: Figure 2 supporting data Version v1
10.5281/zenodo.14013362 · 2024 · External reference
Using High Throughput Sequencing in support of a plant health outbreak reveals novel viruses in Ullucus tuberosus (Basellaceae)
10.1111/ppa.12962 · 2019 · External reference
High throughput sequencing of a 42 year-old isolate of hogweed virus 4 (HV4) reveals that is a member of the genus Chordovirus
10.1007/s42161-022-01117-y · 2022 · External reference
Enhanced apiaceous potyvirus phylogeny, novel viruses, and new country and host records from sequencing Apiaceae samples
10.3390/plants11151951 · 2022 · External reference
First report of Viola white distortion associated virus in Viola tricolor in the United Kingdom
10.5197/j.2044-0588.2016.034.001 · 2016 · External reference
Plant viruses and viroids in the United Kingdom: An analysis of first detections and novel discoveries from 1980 to 2014
10.1016/j.virusres.2017.06.029 · 2017 · External reference
African army ants at the forefront of virome surveillance in a remote tropical forest
10.24072/pcjournal.249 · 2023 · External reference
A list of eclectic viruses, virus-like diseases and viroids of grapevines that should not be considered for regulatory oversight: a global plea from virologists
10.1007/s42161-025-01871-9 · 2025 · External reference
Phylogenetics and evolution of potato virus V: Another potyvirus that originated in the Andes
10.1094/pdis-09-21-1897-re · 2022 · External reference
Potato virus A isolates from three continents: Their biological properties, phylogenetics, and prehistory
10.1094/phyto-08-20-0354-fi · 2021 · External reference
The phylogeography of potato virus X shows the fingerprints of its human vector
10.3390/v13040644 · 2021 · External reference
Potato virus Y; the Andean connection
10.1093/ve/vez037 · 2019 · External reference
The Peruvian Potato Virome
10.21223/p3/yfhlqu · 2013 · External reference
Investigating the pea virome in Germany—Old friends and new players in the field (s)
10.3389/fmicb.2020.583242 · 2020 · External reference
Side-by-side comparison of post-entry quarantine and high throughput sequencing methods for virus and viroid diagnosis
10.3390/biology11020263 · 2022 · External reference
Binomial nomenclature for virus species: a long view
10.1007/s00705-020-04828-8 · 2020 · External reference
Detection of tomato brown rugose fruit virus in environmental residues: The importance of contextualizing test results
10.1111/ppa.13968 · 2024 · External reference
Plant Health research collaboration in the Mediterranean region: case studies on citrus tristeza virus, tomato brown rugose fruit virus and Xylella fastidiosa
10.36253/phyto-14085 · 2022 · External reference
Plant virus evolution under strong drought conditions results in a transition from parasitism to mutualism
10.1073/pnas.2020990118 · 2021 · External reference
Sequence analysis of 43‐year old samples of Plantago lanceolata show that Plantain virus X is synonymous with Actinidia virus X and is widely distributed
10.1111/ppa.13310 · 2021 · External reference
Is there a “biological desert” with the discovery of new plant viruses? A retrospective analysis for new fruit tree viruses
10.3389/fmicb.2020.592816 · 2020 · External reference
Using artificial intelligence to document the hidden RNA virosphere
10.1016/j.cell.2024.09.027 · 2024 · External reference
One Biosecurity: A unified concept to integrate human, animal, plant, and environmental health
10.1042/etls20200067 · 2020 · External reference
Master Species List
2024 · External reference
Virus Metadata Resource
2024 · External reference
ISPM No. 2 Framework for pest risk analysis
2019 · External reference
ISPM No. 11 Pest risk analysis for quarantine pests
2019 · External reference
ISPM 21. Pest risk analysis for regulated non-quarantine pests
2021 · External reference
Written statements from the European Union and its Member States regarding the CPM-17 agenda items
2023 · External reference
Historical virus isolate collections: An invaluable resource connecting plant virology’s pre‐sequencing and post‐sequencing eras
10.1111/ppa.13313 · 2021 · External reference
Phylogenetics and evolution of wheat streak mosaic virus: Its global origin and the source of the Australian epidemic
10.1111/ppa.13609 · 2022 · External reference
Origins of food crops connect countries worldwide
10.1098/rspb.2016.0792 · 2016 · External reference
Towards classification and comprehensive analysis of AI-based COVID-19 diagnostic techniques: A survey
10.1016/j.artmed.2024.102858 · 2024 · External reference
New technologies provide innovative opportunities to enhance understanding of major virus diseases threatening global food security
10.1094/phyto-12-22-0457-v · 2023 · External reference
Badnaviruses of sweet potato: Symptomless coinhabitants on a global scale
10.3389/fpls.2020.00313 · 2020 · External reference
Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses
10.1016/j.virol.2009.03.024 · 2009 · External reference
Phytosanitary interventions for safe global germplasm exchange and the prevention of transboundary pest spread: the role of CGIAR germplasm health units
10.3390/plants10020328 · 2021 · External reference
Pest and disease surveillance, diagnostics and germplasm health in crop protection in sub-Saharan Africa
2019 · External reference
Novel Ampeloviruses Infecting Cassava in Central Africa and the South-West Indian Ocean Islands
10.3390/v13061030 · 2021 · External reference
Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description
10.1111/epp.12863 · 2022 · External reference
Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs
10.1016/j.cell.2022.12.039 · 2023 · External reference
Cassava virus diseases: biology, epidemiology, and management
10.1016/bs.aivir.2014.10.001 · 2015 · External reference
The bumblebee Bombus terrestris carries a primary inoculum of Tomato brown rugose fruit virus contributing to disease spread in tomatoes
10.1371/journal.pone.0210871 · 2019 · External reference
Biosecurity implications of new technology and discovery in plant virus research
10.1371/journal.ppat.1003337 · 2013 · External reference
Illuminating an ecological blackbox: using high throughput sequencing to characterize the plant virome across scales
10.3389/fmicb.2020.578064 · 2020 · External reference
Long-term anthropogenic management and associated loss of plant diversity deeply impact virome richness and composition of Poaceae communities
10.1128/spectrum.04850-22 · 2023 · External reference
Final Report on the “International Workshop on Facilitating International Research Collaboration on Transboundary Plant Pests”.
2020 · External reference
Virome analysis of irrigation water sources provides extensive insights into the diversity and distribution of plant viruses in agroecosystems
10.1016/j.watres.2023.120712 · 2024 · External reference
HTS-based diagnostics of sugarcane viruses: Seasonal variation and its implications for accurate detection
10.3390/v13081627 · 2021 · External reference
Application of HTS for routine plant virus diagnostics: State of the art and challenges
10.3389/fpls.2018.01082 · 2018 · External reference
A virus in a fungus in a plant: three-way symbiosis required for thermal tolerance
10.1126/science.1136237 · 2007 · External reference
Infection, replication and expression of plant viruses in plant pathogen fungi
10.1007/978-981-10-1406-2_3 · 2015 · External reference
10.24072/pcjournal.181 · 2022 · Admitted local publication
A framework for the evaluation of biosecurity, commercial, regulatory, and scientific impacts of plant viruses and viroids identified by NGS technologies
10.3389/fmicb.2017.00045 · 2017 · External reference
Tomato brown rugose fruit virus in aqueous environments – survival and significance of water-mediated transmission
10.3389/fpls.2023.1187920 · 2023 · External reference
When viruses play team sports: Mixed infections in plants
10.1094/phyto-07-19-0250-fi · 2020 · External reference
Symptomless turnip yellows virus infection causes grain yield loss in lentil and field pea: A three-year field study in south-eastern Australia
10.3389/fpls.2022.1049905 · 2022 · External reference
A Novel Tiled Amplicon Sequencing Assay Targeting the Tomato Brown Rugose Fruit Virus (ToBRFV) Genome Reveals Widespread Distribution in Municipal Wastewater Treatment Systems in the Province of Ontario, Canada
10.3390/v16030460 · 2024 · External reference
Unresolved reference
2022 · External reference
Network dynamics in developing interdisciplinary research capacity and collaboration: a case study in vector-borne plant virus research
10.2139/ssrn.5052664 · 2024 · External reference
A comparative analysis of global north and global south economies
2010 · External reference
Molecular and biological properties of an endornavirus infecting winged bean (Psophocarpus tetragonolobus)
10.1007/s11262-016-1398-7 · 2017 · External reference
Bell pepper endornavirus: molecular and biological properties, and occurrence in the genus Capsicum
10.1099/vir.0.034686-0 · 2011 · External reference
Molecular characterization of two evolutionarily distinct endornaviruses co-infecting common bean (Phaseolus vulgaris)
10.1099/vir.0.044487-0 · 2013 · External reference
High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities
10.1111/epp.12472 · 2018 · External reference
Collection, particle sizing and detection of airborne viruses
10.1111/jam.14278 · 2019 · External reference
Next generation sequencing for detection and discovery of plant viruses and viroids: comparison of two approaches
10.3389/fmicb.2017.01998 · 2017 · External reference
Sustainable management of transboundary pests requires holistic and inclusive solutions
10.1007/s12571-022-01301-z · 2022 · External reference
Infection and colonization of Nicotiana benthamiana by Grapevine leafroll-associated virus 3
10.1016/j.virol.2017.07.003 · 2017 · External reference
Characterisation and distribution of karaka Ōkahu purepure virus—a novel emaravirus likely to be endemic to New Zealand
10.3390/v13081611 · 2021 · External reference
Diversity and Pathobiology of an Ilarvirus Unexpectedly Detected in Diverse Plants and Global Sequencing Data
10.1094/phyto-12-22-0465-v · 2023 · External reference
Global advances in tomato virome research: current status and the impact of high-throughput sequencing
10.3389/fmicb.2021.671925. · 2021 · External reference
Honey bee‐assisted surveillance for early plant virus detection
10.1111/aab.12461 · 2018 · External reference
A National Catalogue of Viruses Associated with Indigenous Species Reveals High-Throughput Sequencing as a Driver of Indigenous Virus Discovery
10.3390/v14112477 · 2022 · External reference
The biology and phylogenetics of Potato virus S isolates from the Andean region of South America
10.1094/pdis-09-17-1414-re · 2018 · External reference
Harnessing HTS in a globalized world: rethinking virus discovery, characterization and biosecurity
10.24072/pci.infections.100239 · 2025 · External reference
Binomial nomenclature for virus species: a consultation
10.1007/s00705-019-04477-6 · 2020 · External reference
Broadening the host range and genetic diversity of waikaviruses
10.1016/j.virol.2023.03.018 · 2023 · External reference
Probing of plant transcriptomes reveals the hidden genetic diversity of the family Secoviridae
10.1007/s00705-024-06076-6 · 2024 · External reference
Characterization of distinct strains of an aphid-transmitted ilarvirus (Fam. Bromoviridae) infecting different hosts from South America
10.1016/j.virusres.2020.197944. · 2020 · External reference
Virus taxonomy in the age of metagenomics
10.1038/nrmicro.2016.177 · 2017 · External reference
Composite nature of certain potato viruses of the mosaic group
10.1038/127702a0 · 1931 · External reference
On the composite nature of certain potato virus diseases of the mosaic group as revealed by the use of plant indicators and selective methods of transmission
10.1098/rspb.1931.0080 · 1931 · External reference
Unresolved reference
1937 · External reference
Unresolved reference
1957 · External reference
First report of viola white distortion associated virus on pansy violets (Viola x wittrockiana) in Serbia
10.1007/s42161-021-00767-8 · 2021 · External reference
VirHunter: A deep learning-based method for detection of novel RNA viruses in plant sequencing data
10.3389/fbinf.2022.867111 · 2022 · External reference
Complete genome sequence of lettuce chordovirus 1 isolated from cultivated lettuce in France
10.1007/s00705-018-3858-y · 2018 · External reference
Biological Characterization of Physostegia Chlorotic Mottle Virus, an Emergent Virus Infecting Vegetables in Diversified Production Systems
10.1094/phyto-06-23-0194-r · 2024 · External reference
Biological and Genetic Characterization of Physostegia Chlorotic Mottle Virus in Europe Based on Host Range, Location, and Time
10.1094/pdis-12-21-2800-re · 2022 · External reference
Strategies for controlling cassava mosaic virus disease in Africa
10.1111/j.1365-3059.2005.01282.x · 2005 · External reference
Evolutionary and epidemiological implications of multiple infection in plants
10.1016/j.tplants.2015.10.014 · 2016 · External reference
Yield losses of asymptomatic strawberry plants infected with Strawberry mild yellow edge virus
10.1007/s10658-017-1337-z · 2018 · External reference
Streamlining Global Germplasm Exchange: Integrating Scientific Rigor and Common Sense to Exclude Phantom Agents from Regulation
10.1094/pdis-04-24-0745-fe · 2025 · External reference
Virus species and virus identification: past and current controversies
10.1016/j.meegid.2006.04.002 · 2007 · External reference
Arabidopsis latent virus 1, a comovirus widely spread in Arabidopsis thaliana collections
10.1111/nph.18466 · 2023 · External reference
High Throughput Sequencing in Plant Virus Detection and Discovery
10.1094/phyto-07-18-0257-rvw · 2019 · External reference
Next-generation sequencing for virus detection: covering all the bases
10.1186/s12985-016-0539-x · 2016 · External reference
Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021)
10.1007/s00705-021-05156-1 · 2021 · External reference
Evolution of plant virus diagnostics used in Australian post entry quarantine
10.3390/plants10071430 · 2021 · External reference
Plant rhabdoviruses-their origins and vector interactions
10.1016/j.coviro.2018.11.002 · 2018 · External reference
One Health
2024 · External reference
Virus infection improves drought tolerance
10.1111/j.1469-8137.2008.02627.x · 2008 · External reference
A COVID-19 pandemic artificial intelligence–based system with deep learning forecasting and automatic statistical data acquisition: development and implementation study
10.2196/27806 · 2021 · External reference
Machine intelligence techniques for the identification and diagnosis of COVID-19
10.2174/0929867328666210106143307 · 2021 · External reference