Research graph

References

References from Comparative genomics of Rickettsiella bacteria reveal variable metabolic pathways potentially involved in symbiotic interactions with arthropods. Local targets link to admitted publications; unresolved targets remain external evidence.

Discovery of Novel Rickettsiella spp. in Ixodid Ticks from Western Canada

10.1128/aem.03564-13 · 2014 · External reference

Gut Microbiota Exhibits Discrete Patterns in the Presence of Wssv and Vpahpnd in Black Tiger Shrimp Penaeus Monodon

10.2139/ssrn.4846014 · 2024 · External reference

Miscellaneous Functions for “Grid

2017 · External reference

The Toxin-Antidote Model of Cytoplasmic Incompatibility: Genetics and Evolutionary Implications

10.1016/j.tig.2018.12.004 · 2019 · External reference

Metagenomics of culture isolates and insect tissue illuminate the evolution of Wolbachia, Rickettsia and Bartonella symbionts in Ctenocephalides spp. fleas

10.1099/mgen.0.001045 · 2023 · External reference

Evidence that microbes identified as tick-borne pathogens are nutritional endosymbionts

10.1016/j.cell.2021.03.053 · 2021 · External reference

Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole

10.1073/pnas.1421388112 · 2015 · External reference

Novel Rickettsia genotypes in ticks in French Guiana, South America

10.1038/s41598-020-59488-0 · 2020 · External reference

Microbial community structure reveals instability of nutritional symbiosis during the evolutionary radiation of Amblyomma ticks

10.1111/mec.15373 · 2020 · External reference

The State of the Science. Critical Needs and Gaps in Understanding Prevention, Amelioration, and Resolution of Lyme and Other Tick-Borne Diseases: The Short-Term and Long-Term Outcomes. Workshop Report.

2011 · External reference

The Tick Microbiome: Why Non-pathogenic Microorganisms Matter in Tick Biology and Pathogen Transmission

10.3389/fcimb.2017.00236 · 2017 · External reference

Bacteriophage Flux in Endosymbionts (Wolbachia): Infection Frequency, Lateral Transfer, and Recombination Rates

10.1093/molbev/msh211 · 2004 · External reference

The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal–Microbe Interactions of Ecological Relevance

10.3389/fmicb.2016.01472 · 2016 · External reference

Parallel genome reduction in symbionts descended from closely related free-living bacteria

10.1038/s41559-017-0237-0 · 2017 · External reference

A dual endosymbiosis supports nutritional adaptation to hematophagy in the invasive tick Hyalomma marginatum

10.7554/elife.72747 · 2021 · External reference

Widespread occurrence of Sinorhizobium meliloti strains with a type IV secretion system

10.1007/s13199-018-0547-2 · 2018 · External reference

Metagenomic Profile of the Bacterial Communities Associated with Ixodes ricinus Ticks

10.1371/journal.pone.0025604 · 2011 · External reference

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

10.1186/1471-2105-12-35 · 2011 · External reference

Legionella pneumophila Entry Gene rtxA Is Involved in Virulence

10.1128/iai.69.1.508-517.2001 · 2001 · External reference

UpSetR: an R package for the visualization of intersecting sets and their properties

10.1093/bioinformatics/btx364 · 2017 · External reference

Molecular Characterization and Evolution of Arthropod-Pathogenic Rickettsiella Bacteria

10.1128/aem.00378-07 · 2007 · External reference

Type IV secretion systems: Advances in structure, function, and activation

10.1111/mmi.14670 · 2021 · External reference

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

10.1093/nar/gky425 · 2018 · External reference

Acetic Acid Bacteria, Newly Emerging Symbionts of Insects

10.1128/aem.01336-10 · 2010 · External reference

ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models

10.1093/molbev/msz189 · 2019 · External reference

Endosymbiotic bacteria living inside the poultry red mite (Dermanyssus gallinae)

10.1007/s10493-008-9230-2 · 2009 · External reference

Host origin and tissue microhabitat shaping the microbiota of the terrestrial isopod Armadillidium vulgare

10.1093/femsec/fiw063 · 2016 · External reference

The diversity of reproductive parasites among arthropods: Wolbachiado not walk alone

10.1186/1741-7007-6-27 · 2008 · External reference

Lateral transfers of insertion sequences between Wolbachia, Cardinium and Rickettsia bacterial endosymbionts

10.1038/hdy.2013.56 · 2013 · External reference

The Recent Evolution of a Maternally-Inherited Endosymbiont of Ticks Led to the Emergence of the Q Fever Pathogen, Coxiella burnetii

10.1371/journal.ppat.1004892 · 2015 · External reference

The Importance of Ticks in Q Fever Transmission: What Has (and Has Not) Been Demonstrated?

10.1016/j.pt.2015.06.014 · 2015 · External reference

The High Diversity and Global Distribution of the Intracellular Bacterium Rickettsiella in the Polar Seabird Tick Ixodes uriae

10.1007/s00248-015-0702-8 · 2016 · External reference

Evolutionary changes in symbiont community structure in ticks

10.1111/mec.14094 · 2017 · External reference

Tick-Bacteria Mutualism Depends on B Vitamin Synthesis Pathways

10.1016/j.cub.2018.04.038 · 2018 · External reference

Convergence of Nutritional Symbioses in Obligate Blood Feeders

10.1016/j.pt.2020.07.007 · 2020 · External reference

Nutritional symbiosis in ticks: singularities of the genus Ixodes

10.1016/j.pt.2024.07.001 · 2024 · External reference

MUSCLE: multiple sequence alignment with high accuracy and high throughput

10.1093/nar/gkh340 · 2004 · External reference

OrthoFinder: phylogenetic orthology inference for comparative genomics

10.1186/s13059-019-1832-y · 2019 · External reference

The Ecology and Evolution of Microbes that Manipulate Host Reproduction

10.1146/annurev.ecolsys.110308.120206 · 2009 · External reference

Comparative genomics of Rickettsiella bacteria reveal variable metabolic pathways potentially involved in symbiotic interactions with arthropods. Zenodo

10.5281/zenodo.17208596 · 2025 · External reference

The evolution of intramitochondriality in Midichloria bacteria

10.1111/1462-2920.16446 · 2023 · External reference

The Genetic Diversity of Rickettsiella Symbionts in Ixodes ricinus Throughout Europe

10.1007/s00248-021-01869-7 · 2022 · External reference

Bacterial Communities Associated with Host-Adapted Populations of Pea Aphids Revealed by Deep Sequencing of 16S Ribosomal DNA

10.1371/journal.pone.0120664 · 2015 · External reference

A Tangled Web: Origins of Reproductive Parasitism

10.1093/gbe/evy159 · 2018 · External reference

Distinctive Genome Reduction Rates Revealed by Genomic Analyses of Two Coxiella-Like Endosymbionts in Ticks

10.1093/gbe/evv108 · 2015 · External reference

Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation

10.1007/978-1-0716-1036-7_15 · 2021 · External reference

The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant

10.1093/femsec/fiy185 · 2018 · External reference

A Coxiella mutualist symbiont is essential to the development of Rhipicephalus microplus

10.1038/s41598-017-17309-x · 2017 · External reference

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

10.1038/ncomms10507 · 2016 · External reference

On the haem auxotrophy of the soft tick Ornithodoros moubata

10.1016/j.ttbdis.2023.102170 · 2023 · External reference

Wolbachia as a bacteriocyte-associated nutritional mutualist

10.1073/pnas.0911476107 · 2010 · External reference

miComplete: weighted quality evaluation of assembled microbial genomes

10.1093/bioinformatics/btz664 · 2020 · External reference

Novel Rickettsiella Bacterium in the Leafhopper Orosius albicinctus (Hemiptera: Cicadellidae)

10.1128/aem.00721-13 · 2013 · External reference

The Legionella pneumophila replication vacuole: making a cosy niche inside host cells

10.1038/nrmicro1967 · 2008 · External reference

Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities

10.1016/j.cell.2020.07.023 · 2020 · External reference

Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder

10.1093/jac/dkaa390 · 2020 · External reference

Unravelling the Genomic Diversity and Potential Roles of Tick-Associated Rickettsiella

10.24072/pci.evolbiol.100853 · 2025 · External reference

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

10.1016/j.jmb.2015.11.006 · 2016 · External reference

Characterization of a novel Pantoea symbiont allows inference of a pattern of convergent genome reduction in bacteria associated with Pentatomidae

10.1111/1462-2920.15169 · 2021 · External reference

Evolution of minimal-gene-sets in host-dependent bacteria

10.1016/j.tim.2003.11.006 · 2004 · External reference

Ultrastructural characterization and multilocus sequence analysis (MLSA) of ‘Candidatus Rickettsiella isopodorum’, a new lineage of intracellular bacteria infecting woodlice (Crustacea: Isopoda)

10.1016/j.syapm.2014.04.001 · 2014 · External reference

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

10.3389/fgene.2013.00237 · 2013 · External reference

&lt;I&gt;Rickettsiella&lt;/I&gt;-like Bacteria in &lt;I&gt;Ixodes woodi&lt;/I&gt; (Acari: Ixodidae)

10.1603/0022-2585-39.3.534 · 2002 · External reference

Whole genome-based assessment of the taxonomic position of the arthropod pathogenic bacterium Rickettsiella grylli

10.1111/j.1574-6968.2008.01158.x · 2008 · External reference

Genetic and Electron-Microscopic Characterization of ‘Rickettsiella agriotidis’, a new Rickettsiella Pathotype Associated with Wireworm, Agriotes sp. (Coleoptera: Elateridae)

10.1007/s00284-011-9958-5 · 2011 · External reference

A Rickettsiella Bacterium from the Hard Tick, Ixodes woodi: Molecular Taxonomy Combining Multilocus Sequence Typing (MLST) with Significance Testing

10.1371/journal.pone.0038062 · 2012 · External reference

Prophage WO genes recapitulate and enhance Wolbachia-induced cytoplasmic incompatibility

10.1038/nature21391 · 2017 · External reference

Evolutionary Genetics of Cytoplasmic Incompatibility Genes cifA and cifB in Prophage WO of Wolbachia

10.1093/gbe/evy012 · 2019 · External reference

VFDB 2022: a general classification scheme for bacterial virulence factors

10.1093/nar/gkab1107 · 2022 · External reference

Secretion Systems of Bacterial Phytopathogens and Mutualists (Review)

10.1134/s0003683820020106 · 2020 · External reference

Unrelated facultative endosymbionts protect aphids against a fungal pathogen

10.1111/ele.12031 · 2013 · External reference

Life and Death of Selfish Genes: Comparative Genomics Reveals the Dynamic Evolution of Cytoplasmic Incompatibility

10.1093/molbev/msaa209 · 2021 · External reference

Genome sequencing and comparative analysis of Wolbachia strain wAlbA reveals Wolbachia-associated plasmids are common

10.1371/journal.pgen.1010406 · 2022 · External reference

Genome Sequence of Diplorickettsia massiliensis, an Emerging Ixodes ricinus-Associated Human Pathogen

10.1128/jb.00448-12 · 2012 · External reference

Extreme genome reduction in symbiotic bacteria

10.1038/nrmicro2670 · 2011 · External reference

A Novel Obligate Intracellular Gamma-Proteobacterium Associated with Ixodid Ticks, Diplorickettsia massiliensis, Gen. Nov., Sp. Nov

10.1371/journal.pone.0011478 · 2010 · External reference

Diplorickettsia Bacteria in an Ixodes scapularis Tick, Vermont, USA

10.3201/eid2605.191135 · 2020 · External reference

Microbial Minimalism

10.1016/s0092-8674(02)00665-7 · 2002 · External reference

Tick microbiome: the force within

10.1016/j.pt.2015.03.010 · 2015 · External reference

Genomic Insight into Symbiosis-Induced Insect Color Change by a Facultative Bacterial Endosymbiont, “Candidatus Rickettsiella viridis”

10.1128/mbio.00890-18 · 2018 · External reference

Conditional Reduction of Predation Risk Associated with a Facultative Symbiont in an Insect

10.1371/journal.pone.0143728 · 2015 · External reference

A Rickettsiella Endosymbiont Is a Potential Source of Essential B-Vitamins for the Poultry Red Mite, Dermanyssus gallinae

10.3389/fmicb.2021.695346 · 2021 · External reference

Legionella Becoming a Mutualist: Adaptive Processes Shaping the Genome of Symbiont in the Louse Polyplax serrata

10.1093/gbe/evx217 · 2017 · External reference

Endosymbiotic Rickettsiella causes cytoplasmic incompatibility in a spider host

10.1098/rspb.2020.1107 · 2020 · External reference

Unresolved reference

2013 · External reference

A robust phylogenetic framework for members of the order Legionellales and its main genera (Legionella, Aquicella, Coxiella and Rickettsiella) based on phylogenomic analyses and identification of molecular markers demarcating different clades

10.1007/s10482-021-01569-9 · 2021 · External reference

Genomic changes during the evolution of the Coxiella genus along the parasitism-mutualism continuum

10.24072/pcjournal.269 · 2023 · Admitted local publication

Prokka: rapid prokaryotic genome annotation

10.1093/bioinformatics/btu153 · 2014 · External reference

The CcmC–CcmE interaction during cytochrome c maturation by System I is driven by protein–protein and not protein–heme contacts

10.1074/jbc.ra118.005024 · 2018 · External reference

Clustal Omega for making accurate alignments of many protein sequences

10.1002/pro.3290 · 2018 · External reference

Genome dynamics across the evolutionary transition to endosymbiosis

10.1016/j.cub.2024.10.044 · 2024 · External reference

The HHpred interactive server for protein homology detection and structure prediction

10.1093/nar/gki408 · 2005 · External reference

Unresolved reference

2013 · External reference

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

10.1093/bioinformatics/btu033 · 2014 · External reference

Diplorickettsia massiliensis as a human pathogen

10.1007/s10096-011-1318-7 · 2011 · External reference

Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes

10.1093/molbev/msac153 · 2022 · External reference

Lifestyle transitions in endosymbiosis

10.24072/pci.microbiol.100003 · 2023 · External reference

Genomic Underpinnings of Cytoplasmic Incompatibility: CIF Gene-Neighborhood Diversification Through Extensive Lateral Transfers and Recombination in Wolbachia

10.1093/gbe/evae171 · 2024 · External reference

Symbiotic Bacterium Modifies Aphid Body Color

10.1126/science.1195463 · 2010 · External reference

Phenotypic Effect of “Candidatus Rickettsiella viridis,” a Facultative Symbiont of the Pea Aphid (Acyrthosiphon pisum), and Its Interaction with a Coexisting Symbiont

10.1128/aem.03049-13 · 2014 · External reference

Molecular pathogenesis of the obligate intracellular bacterium Coxiella burnetii

10.1038/nrmicro3049 · 2013 · External reference

Phylogenomic analysis of Wolbachia genomes from the Darwin Tree of Life biodiversity genomics project

10.1371/journal.pbio.3001972 · 2023 · External reference

Molecular detection of Rickettsia, Coxiella and Rickettsiella DNA in three native Australian tick species

10.1007/s10493-009-9260-4 · 2009 · External reference

Candidate pathogenicity islands in the genome of ‘Candidatus Rickettsiella isopodorum’, an intracellular bacterium infecting terrestrial isopod crustaceans

10.7717/peerj.2806 · 2016 · External reference

The incidence of bacterial endosymbionts in terrestrial arthropods

10.1098/rspb.2015.0249 · 2015 · External reference

Bandage: interactive visualization of de novo genome assemblies

10.1093/bioinformatics/btv383 · 2015 · External reference

10.1007/978-0-387-98141-3

10.1007/978-0-387-98141-3 · 2009 · External reference

Streamlined Plot Theme and Plot Annotations for “ggplot2" [R package cowplot version 1.1.3]

2024 · External reference

PHASTEST: faster than PHASTER, better than PHAST

10.1093/nar/gkad382 · 2023 · External reference

Effects of Nanoplastics on the Swimming Behaviour and Gut Microbiome of the Freshwater Amphipod Gammarus Pulex

10.2139/ssrn.4876517 · 2024 · External reference

A large-scale evaluation of algorithms to calculate average nucleotide identity

10.1007/s10482-017-0844-4 · 2017 · External reference

10.1201/b11008

10.1201/b11008 · 2011 · External reference

Symbiont-regulated serotonin biosynthesis modulates tick feeding activity

10.1016/j.chom.2021.08.011 · 2021 · External reference