Research graph
References from Simulation of bacterial populations with SLiM. Local targets link to admitted publications; unresolved targets remain external evidence.
Frequency Spectrum Neutrality Tests: One for All and All for One
10.1534/genetics.109.104042 · 2009 · External reference
Coalescent framework for prokaryotes undergoing interspecific homologous recombination
10.1038/s41437-017-0034-1 · 2018 · External reference
Predicting geographic location from genetic variation with deep neural networks
10.7554/elife.54507 · 2020 · External reference
Capsular Switching in Group B Streptococcus CC17 Hypervirulent Clone: A Future Challenge for Polysaccharide Vaccine Development
10.1093/infdis/jis605 · 2012 · External reference
CoreSimul: a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination
10.1186/s12859-020-03619-x · 2020 · External reference
Factors driving effective population size and pan-genome evolution in bacteria
10.1186/s12862-018-1272-4 · 2018 · External reference
Spatial Population Genetics: It's About Time
10.1146/annurev-ecolsys-110316-022659 · 2019 · External reference
Shaping a bacterial genome by large chromosomal replacements, the evolutionary history of Streptococcus agalactiae
10.1073/pnas.0803654105 · 2008 · External reference
SimBac: simulation of whole bacterial genomes with homologous recombination
10.1099/mgen.0.000044 · 2016 · External reference
Projecting genetic diversity and population viability for the fragmented orang-utan population in the Kinabatangan floodplain, Sabah, Malaysia
10.3354/esr00295 · 2010 · External reference
The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes
10.1534/genetics.110.118661 · 2010 · External reference
A High-Resolution View of Genome-Wide Pneumococcal Transformation
10.1371/journal.ppat.1002745 · 2012 · External reference
Population genomics of post-vaccine changes in pneumococcal epidemiology
10.1038/ng.2625 · 2013 · External reference
Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape
10.1093/gbe/evu120 · 2014 · External reference
Approximate Bayesian Computation (ABC) in practice
10.1016/j.tree.2010.04.001 · 2010 · External reference
Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline
10.1038/ncomms5544 · 2014 · External reference
The Bacterial Sequential Markov Coalescent
10.1534/genetics.116.198796 · 2017 · External reference
The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference
10.1093/molbev/msy224 · 2019 · External reference
Statistical Properties of Segregating Sites
10.1006/tpbi.1995.1025 · 1995 · External reference
Epidemiologic data and pathogen genome sequences: a powerful synergy for public health
10.1186/s13059-014-0538-4 · 2014 · External reference
Evolutionary Modeling in SLiM 3 for Beginners
10.1093/molbev/msy237 · 2019 · External reference
SLiM 3: Forward Genetic Simulations Beyond the Wright–Fisher Model
10.1093/molbev/msy228 · 2019 · External reference
Unresolved reference
External reference
SLiM 2: Flexible, Interactive Forward Genetic Simulations
10.1093/molbev/msw211 · 2017 · External reference
A flexible forward simulator for populations subject to selection and demography
10.1093/bioinformatics/btn522 · 2008 · External reference
An overview of the utility of population simulation software in molecular ecology
10.1111/mec.12741 · 2014 · External reference
Sequence-Level Population Simulations Over Large Genomic Regions
10.1534/genetics.106.069088 · 2007 · External reference
Unresolved reference
External reference
Forecasting changes in population genetic structure of alpine plants in response to global warming
10.1111/j.1365-294x.2012.05541.x · 2012 · External reference
An ABC Method for Whole-Genome Sequence Data: Inferring Paleolithic and Neolithic Human Expansions
10.1093/molbev/msz038 · 2019 · External reference
Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes
10.1371/journal.pcbi.1004842 · 2016 · External reference
Inferring whole-genome histories in large population datasets
10.1038/s41588-019-0483-y · 2019 · External reference
diploS/HIC: An Updated Approach to Classifying Selective Sweeps
10.1534/g3.118.200262 · 2018 · External reference
The Impact of Selection, Gene Conversion, and Biased Sampling on the Assessment of Microbial Demography
10.1093/molbev/msw048 · 2016 · External reference
Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition
10.1186/gb-2007-8-5-r71 · 2007 · External reference
Unresolved reference
External reference
Microbial biogeography: putting microorganisms on the map
10.1038/nrmicro1341 · 2006 · External reference
Molecular evolution of the Escherichia coli chromosome. III. Clonal frames.
10.1093/genetics/126.3.505 · 1990 · External reference
Lateral gene transfer and the nature of bacterial innovation
10.1038/35012500 · 2000 · External reference
10.1002/9780470600122
10.1002/9780470600122 · External reference
Neutral Theory, Microbial Practice: Challenges in Bacterial Population Genetics
10.1093/molbev/msy078 · 2018 · External reference
Inferring Demography and Selection in Organisms Characterized by Skewed Offspring Distributions
10.1534/genetics.118.301684 · 2019 · External reference
Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation
10.1111/1755-0998.13224 · 2020 · External reference
Escherichia coli Habitats, Cell Types, and Molecular Mechanisms of Gene Control
10.1086/284168 · 1983 · External reference
Supervised Machine Learning for Population Genetics: A New Paradigm
10.1016/j.tig.2017.12.005 · 2018 · External reference
Deep Learning for Population Genetic Inference
10.1371/journal.pcbi.1004845 · 2016 · External reference
Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation
10.1038/s41598-019-39773-3 · 2019 · External reference
Population Genomics in Bacteria: A Case Study of Staphylococcus aureus
10.1093/molbev/msr249 · 2012 · External reference
Recombination and the power of statistical tests of neutrality
10.1017/s0016672399003870 · 1999 · External reference
A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci*
10.1007/s10592-005-9100-y · 2006 · External reference
Recombination in Human Mitochondrial DNA?
10.1093/genetics/159.2.749 · 2001 · External reference
