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References from Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals. Local targets link to admitted publications; unresolved targets remain external evidence.
Genetic diversity, clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular, fragmented reef system
10.1007/s00227-013-2355-9 · 2013 · External reference
Defining the tipping point. A complex cellular life/death balance in corals in response to stress
10.1038/srep00160 · 2011 · External reference
A new look at the statistical model identification
10.1109/tac.1974.1100705 · 1974 · External reference
Basic local alignment search tool
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
HTSeq--a Python framework to work with high-throughput sequencing data
10.1093/bioinformatics/btu638 · 2015 · External reference
genclone: a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization
10.1111/j.1471-8286.2006.01522.x · 2006 · External reference
Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals
10.1146/annurev.ecolsys.110308.120220 · 2009 · External reference
Flexibility and Specificity in Coral-Algal Symbiosis: Diversity, Ecology, and Biogeography of Symbiodinium
10.1146/annurev.ecolsys.34.011802.132417 · 2003 · External reference
Has the Earth’s sixth mass extinction already arrived?
10.1038/nature09678 · 2011 · External reference
Genomic basis for coral resilience to climate change
10.1073/pnas.1210224110 · 2013 · External reference
Fitting Linear Mixed-Effects Models Usinglme4
10.18637/jss.v067.i01 · 2015 · External reference
Coral Thermal Tolerance: Tuning Gene Expression to Resist Thermal Stress
10.1371/journal.pone.0050685 · 2012 · External reference
Resistance to thermal stress in corals without changes in symbiont composition
10.1098/rspb.2011.1780 · 2012 · External reference
Confronting the coral reef crisis
10.1038/nature02691 · 2004 · External reference
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference
The role of zooxanthellae in the thermal tolerance of corals: a ‘nugget of hope’ for coral reefs in an era of climate change
10.1098/rspb.2006.3567 · 2006 · External reference
Manipulation of FASTQ data with Galaxy
10.1093/bioinformatics/btq281 · 2010 · External reference
Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
10.1371/journal.pbio.1002226 · 2015 · External reference
Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef
10.1111/j.1462-2920.2005.00793.x · 2005 · External reference
Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato
10.1186/s40168-018-0423-6 · 2018 · External reference
Exploring the basis of thermotolerance in the reef coral Goniastrea aspera
10.3354/meps242119 · 2002 · External reference
Thermal tolerances of reef corals in the Gulf: A review of the potential for increasing coral survival and adaptation to climate change through assisted translocation
10.1016/j.marpolbul.2012.09.006 · 2013 · External reference
A survey of best practices for RNA-seq data analysis
10.1186/s13059-016-0881-8 · 2016 · External reference
Bacterial assemblages shifts from healthy to yellow band disease states in the dominant reef coralMontastraea faveolata
10.1111/j.1758-2229.2012.00397.x · 2013 · External reference
Avatars of information: towards an inclusive evolutionary synthesis
10.1016/j.tree.2013.02.010 · 2013 · External reference
Genomic determinants of coral heat tolerance across latitudes
10.1126/science.1261224 · 2015 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2013 · External reference
FROGS: Find, Rapidly, OTUs with Galaxy Solution
10.1093/bioinformatics/btx791 · 2017 · External reference
Diel patterns of larval release by five brooding scleractinian corals
10.3354/meps321133 · 2006 · External reference
Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type β in Reunion Island, South Western Indian Ocean
10.1371/journal.pone.0169692 · 2017 · External reference
High genetic differentiation and low connectivity in the coral Pocillopora damicornis type β at different spatial scales in the Southwestern Indian Ocean and the Tropical Southwestern Pacific
10.1007/s00227-018-3428-6 · 2018 · External reference
Reevaluating species number, distribution and endemism of the coral genus Pocillopora Lamarck, 1816 using species delimitation methods and microsatellites
10.1016/j.ympev.2017.01.018 · 2017 · External reference
Galaxy: A platform for interactive large-scale genome analysis
10.1101/gr.4086505 · 2005 · External reference
Symbiogenesis: the holobiont as a unit of evolution.
10.2436/20.1501.01.188 · 2013 · External reference
Adaptive abilities of the Mediterranean red coral Corallium rubrum in a heterogeneous and changing environment: from population to functional genetics
10.1016/j.jembe.2013.10.010 · 2013 · External reference
Reproduction, dispersal and recruitment of scleractinian corals
1990 · External reference
How stable ‘should’ epigenetic modifications be? Insights from adaptive plasticity and bet hedging
10.1111/evo.12324 · 2013 · External reference
Defining the Core Microbiome in Corals’ Microbial Soup
10.1016/j.tim.2016.11.003 · 2017 · External reference
Coral Reefs Under Rapid Climate Change and Ocean Acidification
10.1126/science.1152509 · 2007 · External reference
Open source clustering software
10.1093/bioinformatics/bth078 · 2004 · External reference
Climate Change, Human Impacts, and the Resilience of Coral Reefs
10.1126/science.1085046 · 2003 · External reference
Coral reefs in the Anthropocene
10.1038/nature22901 · 2017 · External reference
Global warming and recurrent mass bleaching of corals
10.1038/nature21707 · 2017 · External reference
The evolutionary implications of epigenetic inheritance
10.1098/rsfs.2016.0135 · 2017 · External reference
Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
10.1186/1471-2156-11-94 · 2010 · External reference
Gene expression plasticity as a mechanism of coral adaptation to a variable environment
10.1038/s41559-016-0014 · 2016 · External reference
Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides) from different thermal environments
10.1111/mec.12390 · 2013 · External reference
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
10.1093/nar/gks808 · 2012 · External reference
Biogeography of two species of Symbiodinium (Freudenthal) inhabiting the intertidal sea anemone Anthopleura elegantissima (Brandt)
10.2307/1542872 · 2000 · External reference
Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts
10.1016/j.cub.2018.07.008 · 2018 · External reference
Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation
10.1111/j.1420-9101.2009.01754.x · 2009 · External reference
Marine heatwave causes unprecedented regional mass bleaching of thermally resistant corals in northwestern Australia
10.1038/s41598-017-14794-y · 2017 · External reference
Bacterial dynamics within the mucus, tissue and skeleton of the coral Porites lutea during different seasons
10.1038/srep07320 · 2014 · External reference
Flexibility in Algal Endosymbioses Shapes Growth in Reef Corals
10.1126/science.1095733 · 2004 · External reference
Responses of coral-associated bacterial communities to heat stress differ withSymbiodiniumtype on the same coral host
10.1111/j.1365-294x.2010.04620.x · 2010 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
FLASH: fast length adjustment of short reads to improve genome assemblies
10.1093/bioinformatics/btr507 · 2011 · External reference
Swarm: robust and fast clustering method for amplicon-based studies
10.7717/peerj.593 · 2014 · External reference
Gene expression profiles during short-term heat stress; branchingvs.massive Scleractinian corals of the Red Sea
10.7717/peerj.1814 · 2016 · External reference
Unresolved reference
1991 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
Potential for rapid genetic adaptation to warming in a Great Barrier Reef coral
10.1101/114173 · 2017 · External reference
Potential impact of stress activated retrotransposons on genome evolution in a marine diatom
10.1186/1471-2164-10-624 · 2009 · External reference
Assessing the Impacts of Experimentally Elevated Temperature on the Biological Composition and Molecular Chaperone Gene Expression of a Reef Coral
10.1371/journal.pone.0026529 · 2011 · External reference
Dual‐compartmental transcriptomic + proteomic analysis of a marine endosymbiosis exposed to environmental change
10.1111/mec.13896 · 2016 · External reference
Compartment‐specific transcriptomics in a reef‐building coral exposed to elevated temperatures
10.1111/mec.12982 · 2014 · External reference
Animals in a bacterial world, a new imperative for the life sciences
10.1073/pnas.1218525110 · 2013 · External reference
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
10.1371/journal.pone.0061217 · 2013 · External reference
Epimicrobiota Associated with the Decay and Recovery of Orbicella Corals Exhibiting Dark Spot Syndrome
10.3389/fmicb.2016.00893 · 2016 · External reference
Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas
10.1007/s00253-016-7777-0 · 2016 · External reference
Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales
10.1038/ismej.2016.95 · 2016 · External reference
Many corals host thermally resistant symbionts in high-temperature habitat
10.1007/s00338-010-0696-0 · 2010 · External reference
Mechanisms of reef coral resistance to future climate change
10.1126/science.1251336 · 2014 · External reference
Species are hypotheses: avoid connectivity assessments based on pillars of sand
10.1111/mec.13048 · 2015 · External reference
Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix
10.1038/ismej.2015.3 · 2015 · External reference
Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience
10.3389/fmicb.2017.00341 · 2017 · External reference
Blind to morphology: genetics identifies several widespread ecologically common species and few endemics among Indo-Pacific cauliflower corals (Pocillopora , Scleractinia)
10.1111/jbi.12110 · 2013 · External reference
Location-Specific Responses to Thermal Stress in Larvae of the Reef-Building Coral Montastraea faveolata
10.1371/journal.pone.0011221 · 2010 · External reference
The red coral (Corallium rubrum) transcriptome: a new resource for population genetics and local adaptation studies
10.1111/1755-0998.12383 · 2015 · External reference
Inference of Population Structure Using Multilocus Genotype Data
10.1093/genetics/155.2.945 · 2000 · External reference
Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals
10.1371/journal.pone.0094297 · 2014 · External reference
The Global Biodiversity of Coral Reefs: A comparison with Rain Forests
10.17226/4901 · 1997 · External reference
Climate change in the oceans: evolutionary versus phenotypically plastic responses of marine animals and plants
10.1111/eva.12109 · 2013 · External reference
Present Limits to Heat-Adaptability in Corals and Population-Level Responses to Climate Extremes
10.1371/journal.pone.0024802 · 2011 · External reference
Anticipative management for coral reef ecosystem services in the 21st century
10.1111/gcb.12725 · 2015 · External reference
VSEARCH: a versatile open source tool for metagenomics
10.7717/peerj.2584 · 2016 · External reference
Diversity and distribution of coral-associated bacteria
10.3354/meps243001 · 2002 · External reference
The role of microorganisms in coral health, disease and evolution
10.1038/nrmicro1635 · 2007 · External reference
Java Treeview--extensible visualization of microarray data
10.1093/bioinformatics/bth349 · 2004 · External reference
Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida
10.1038/ismej.2009.103 · 2009 · External reference
With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics
10.1111/zoj.12092 · 2014 · External reference
Symbiotic Dinoflagellate Functional Diversity Mediates Coral Survival under Ecological Crisis
10.1016/j.tree.2017.07.013 · 2017 · External reference
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
10.1371/journal.pone.0021800 · 2011 · External reference
Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes
10.1128/msystems.00028-16 · 2016 · External reference
Rapid adaptive responses to climate change in corals
10.1038/nclimate3374 · 2017 · External reference
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
10.1038/nbt.1621 · 2010 · External reference
Building coral reef resilience through assisted evolution
10.1073/pnas.1422301112 · 2015 · External reference
Revisiting the winners and the losers a decade after coral bleaching
10.3354/meps09203 · 2011 · External reference
Unresolved reference
2000 · External reference
Sequencing, de novo assembly and annotation of the genome of the scleractinian coral, Pocillopora acutaSequencing, de novo assembly and annotation of the genome of the scleractinian coral, Pocillopora acuta
10.1101/698688 · External reference
Thermal Stress Triggers Broad Pocillopora damicornis Transcriptomic Remodeling, while Vibrio coralliilyticus Infection Induces a More Targeted Immuno-Suppression Response
10.1371/journal.pone.0107672 · 2014 · External reference
Coral bleaching under thermal stress: putative involvement of host/symbiont recognition mechanisms
10.1186/1472-6793-9-14 · 2009 · External reference
Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis
10.1242/jeb.009597 · 2008 · External reference
Genetic evidence for mixed modes of reproduction in the coral Pocillopora damicornis and its effect on population structure
10.3354/meps306115 · 2006 · External reference
Bacterial community dynamics are linked to patterns of coral heat tolerance
10.1038/ncomms14213 · 2017 · External reference
Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
10.1111/j.1574-6976.2008.00123.x · 2008 · External reference
