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References from Molecular Epidemiology and Evolution of Swine Influenza A Viruses, Vietnam, 2020–2024. Local targets link to admitted publications; unresolved targets remain external evidence.
Global trends in infectious diseases of swine.
10.1073/pnas.1806068115 · 2018 · External reference
Origins of the 1918 pandemic: revisiting the swine “mixing vessel” hypothesis.
10.1093/aje/kwy150 · 2018 · External reference
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic.
10.1038/nature08182 · 2009 · External reference
Swine influenza A viruses and the tangled relationship with humans.
10.1101/cshperspect.a038737 · 2021 · External reference
Continual reintroduction of human pandemic H1N1 influenza A viruses into swine in the United States, 2009 to 2014.
10.1128/jvi.00459-15 · 2015 · External reference
Global migration of influenza A viruses in swine.
10.1038/ncomms7696 · 2015 · External reference
History of swine influenza viruses in Asia.
10.1007/82_2011_179 · 2013 · External reference
Swine influenza viruses in Northern Vietnam in 2013–2014.
10.1038/s41426-018-0109-y · 2018 · External reference
Long-term epidemiology and evolution of swine influenza viruses, Vietnam.
10.3201/eid2907.230165 · 2023 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
10.1093/molbev/mst010 · 2013 · External reference
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era.
10.1093/molbev/msaa015 · 2020 · External reference
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
10.1093/sysbio/syq010 · 2010 · External reference
TreeTime: maximum-likelihood phylodynamic analysis.
10.1093/ve/vex042 · 2018 · External reference
Unresolved reference
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A fast likelihood method to reconstruct and visualize ancestral scenarios.
10.1093/molbev/msz131 · 2019 · External reference
Evaluation of phenotypic markers in full genome sequences of avian influenza isolates from California.
10.1016/j.cimid.2013.06.003 · 2013 · External reference
Inventory of molecular markers affecting biological characteristics of avian influenza A viruses.
10.1007/s11262-019-01700-z · 2019 · External reference
Sources and sinks of influenza A virus genomic diversity in swine from 2009 to 2022 in the United States.
10.1128/jvi.00541-25 · 2025 · External reference
Quantifying the zoonotic risk profile of European influenza A viruses in swine from 2010 to 2020 inclusive.
10.1128/jvi.00306-25 · 2025 · External reference
Genome-scale evolution and phylodynamics of swine influenza A viruses in China: a genomic epidemiology study.
10.1016/j.lanmic.2024.101020 · 2025 · External reference
The genomic landscape of swine influenza A viruses in Southeast Asia.
10.1073/pnas.2301926120 · 2023 · External reference
Influenza A virus transmission in swine farms and during transport in the swine supply chain.
10.1111/tbed.14667 · 2022 · External reference
Influenza A viruses of swine (IAV-S) in Vietnam from 2010 to 2015: multiple introductions of A(H1N1)pdm09 viruses into the pig population and diversifying genetic constellations of enzootic IAV-S.
2016 · External reference
Reassortment between swine H3N2 and 2009 pandemic H1N1 in the United States resulted in influenza A viruses with diverse genetic constellations with variable virulence in pigs.
10.1128/jvi.01763-16 · 2017 · External reference
Persistence of pdm2009-H1N1 internal genes of swine influenza in pigs, Thailand.
10.1038/s41598-020-76771-2 · 2020 · External reference
Continuous evolution of influenza A viruses of swine from 2013 to 2015 in Guangdong, China.
10.1371/journal.pone.0217607 · 2019 · External reference
Two genotypes of H3N2 swine influenza viruses identified in pigs from Shandong Province, China.
10.3389/fcimb.2024.1517023 · 2024 · External reference
PB2 substitutions V598T/I increase the virulence of H7N9 influenza A virus in mammals.
10.1016/j.virol.2016.11.008 · 2017 · External reference
PB2 mutations D701N and S714R promote adaptation of an influenza H5N1 virus to a mammalian host.
10.1128/jvi.00422-14 · 2014 · External reference
2019-2020 H1N1 clade A5a.1 viruses have better in vitro fitness compared with the co-circulating A5a.2 clade.
10.1038/s41598-023-37122-z · 2023 · External reference
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