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References from Gut microbiota and fecal metabolomic alterations in hospitalized patients with Staphylococcus aureus infection: an exploratory multi-omics study. Local targets link to admitted publications; unresolved targets remain external evidence.
Gut microbiota regulation of tryptophan metabolism in health and disease
10.1016/j.chom.2018.05.003 · 2018 · External reference
The rise of the Enterococcus: beyond vancomycin resistance
10.1038/nrmicro2761 · 2012 · External reference
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
10.1038/s41587-019-0209-9 · 2019 · External reference
DADA2: high-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · 2016 · External reference
Using MetaboAnalyst 4.0 for comprehensive and integrative metabolomics data analysis
10.1002/cpbi.86 · 2019 · External reference
Multigroup analysis of compositions of microbiomes with covariate adjustments and repeated measures
10.1038/s41592-023-02092-7 · 2024 · External reference
Staphylococcus aureus infections and human intestinal microbiota
10.3390/pathogens13040276 · 2024 · External reference
The gut microbiome in sepsis: from dysbiosis to personalized therapy
10.3390/jcm13206082 · 2024 · External reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · 2013 · External reference
Bile salt biotransformations by human intestinal bacteria
10.1194/jlr.r500013-jlr200 · 2006 · External reference
Microbial tryptophan catabolites in health and disease
10.1038/s41467-018-05470-4 · 2018 · External reference
Developing a new definition and assessing new clinical criteria for septic shock: for the Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3)
10.1001/jama.2016.0289 · 2016 · External reference
The third international consensus definitions for sepsis and septic shock (Sepsis-3)
10.1001/jama.2016.0287 · 2016 · External reference
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
10.1073/pnas.0804812105 · 2008 · External reference
Altered intestinal microbiome and metabolome correspond to the clinical outcome of sepsis
10.1186/s13054-023-04412-x · 2023 · External reference
Progress in the study of the correlation between sepsis and intestinal microecology
10.3389/fcimb.2024.1357178 · 2024 · External reference
Clinical management of Staphylococcus aureus bacteraemia
10.1016/s1473-3099(10)70285-1 · 2011 · External reference
Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestations, and management
10.1128/cmr.00134-14 · 2015 · External reference
Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans
10.1172/jci43918 · 2010 · External reference
Predictors of mortality in Staphylococcus aureus bacteremia
10.1128/cmr.05022-11 · 2012 · External reference
Symbiotic bacterial metabolites regulate gastrointestinal barrier function via the xenobiotic sensor PXR and Toll-like receptor 4
10.1016/j.immuni.2014.06.014 · 2014 · External reference
Host variables confound gut microbiota studies of human disease
10.1038/s41586-020-2881-9 · 2020 · External reference
Intestinal crosstalk between bile acids and microbiota and its impact on host metabolism
10.1016/j.cmet.2016.05.005 · 2016 · External reference
Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22
10.1016/j.immuni.2013.08.003 · 2013 · External reference
Butyrate protects against MRSA pneumonia via regulating gut-lung microbiota and alveolar macrophage M2 polarization
10.1128/mbio.01987-23 · 2023 · External reference
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
10.1126/science.aad3369 · 2016 · External reference