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References from From sequence to timescale: a frequency-domain control-theoretic framework linking ncRNA sequence composition to epigenetic regulatory timescales. Local targets link to admitted publications; unresolved targets remain external evidence.
A negative feedback model for a mechanism based description of longitudinal observations
10.3414/me12-01-0076 · 2013 · External reference
Unresolved reference
2024 · External reference
The human XIST gene: Analysis of a 17-kb RNA molecule that is expressed only from the inactive X chromosome and contains conserved repetitive domains
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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
10.1016/j.cell.2007.05.022 · 2007 · External reference
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
10.1016/j.molcel.2010.08.011 · 2010 · External reference
Oscillations in NF-κB signaling control the dynamics of gene expression
10.1126/science.1099962 · 2004 · External reference
Real-time imaging of the somite segmentation clock: Revelation of unstable oscillators in the individual presomitic mesoderm cells
10.1073/pnas.0508658103 · 2006 · External reference
Dynamics of the p53-Mdm2 feedback loop in individual cells
10.1038/ng1293 · 2004 · External reference
Regulatory interactions between RNA and polycomb repressive complex 2
10.1016/j.molcel.2014.05.009 · 2014 · External reference
The xist lncRNA exploits three-dimensional genome architecture to spread across the x chromosome
10.1126/science.1237973 · 2013 · External reference
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
10.1016/j.molcel.2009.01.026 · 2009 · External reference
Alternative 3’-end processing of long noncoding RNA initiates construction of nuclear paraspeckles
10.1038/emboj.2012.251 · 2012 · External reference
Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes
10.1016/j.cell.2013.07.011 · 2013 · External reference
Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes
10.1038/nrm.2017.26 · 2017 · External reference
Mammalian genes are transcribed with widely different bursting kinetics
10.1126/science.1198817 · 2011 · External reference
Genomic encoding of transcriptional burst kinetics
10.1038/s41586-018-0836-1 · 2019 · External reference
Unresolved reference
2014 · External reference
Unresolved reference
2010 · External reference
Epigenetic inheritance uncoupled from sequence-specific recruitment
10.1126/science.1258699 · 2015 · External reference
miRBase: From microRNA sequences to function
10.1093/nar/gky1141 · 2019 · External reference
NONCODE 2016: An informative and valuable data source of long non-coding RNAs
10.1093/nar/gkv1252 · 2016 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
DREISS: Using state-space models to infer the dynamics of gene expression driven by external and internal regulatory networks
10.1371/journal.pcbi.1005146 · 2016 · External reference
Database for mRNA half-life of 19–977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells
10.1093/dnares/dsn030 · 2009 · External reference
The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation
10.1038/s41467-024-50402-0 · 2024 · External reference
Optogenetic dissection of transcriptional repression in a multicellular organism
10.1038/s41467-024-53539-0 · 2024 · External reference
Optogenetic control of cAMP oscillations reveals frequencyselective transcription factor dynamics in dictyostelium
10.1242/dev.204403 · 2025 · External reference
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
10.1016/j.molcel.2005.02.032 · 2005 · External reference
Structure of the s-adenosylmethionine riboswitch regulatory mRNA element
10.2210/pdb2gis/pdb · 2006 · External reference
Folding of the adenine riboswitch
10.1016/j.chembiol.2006.06.010 · 2006 · External reference
An mRNA structure that controls gene expression by binding FMN
10.1073/pnas.212628899 · 2002 · External reference
Cocrystal structure of a class I PreQ1 riboswitch
10.1038/nsmb.1563 · 2009 · External reference
A continuum model of transcriptional bursting
10.7554/elife.13051 · 2016 · External reference
A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting
10.1038/ncomms12248 · 2016 · External reference
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells
10.1126/sciadv.aaz6699 · 2020 · External reference
Pulsatile stimulation determines timing and specificity of NF-κb-dependent transcription
10.1126/science.1164860 · 2009 · External reference
Instability of Hes7 protein is crucial for the somite segmentation clock
10.1038/ng1372 · 2004 · External reference
Impact of competition between precursor and mature microRNAs on stochastic gene expression
10.64898/2026.01.03.697472 · 2026 · External reference
Beyond the obvious: Exploring the underappreciated dynamics and contextspecific functions of lncRNAs
10.1016/j.bbrc.2026.153561 · 2026 · External reference
Epitranscriptomic RNA modifications in human disease: Cooperative networks, molecular mechanisms, and therapeutic opportunities
10.1016/j.bbrc.2026.153673 · 2026 · External reference
In-cell NMR spectroscopy of unmodified RNA in living human cells enabled by RNase inhibitor cocktail
10.1038/s41598-025-20519-3 · 2025 · External reference
In-cell NMR spectroscopy: Recent methodological advances and applications in structural biology
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