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References from Comprehensive whole genome hybrid assembly unravels genes and secretome of Albugo candida (Indian isolate), causing white rust disease in Brassica juncea. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1093/nar/gkv416 · 2015 · External reference
WRR4 encodes a TIR-NB-LRR protein that confers broad-spectrum white rust resistance in Arabidopsis thaliana to four physiological races of Albugo candida
10.1094/mpmi-21-6-0757 · 2008 · External reference
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2020 · External reference
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10.1093/nargab/lqaa108 · 2021 · External reference
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10.1093/molbev/msab293 · 2021 · External reference
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10.1093/nar/gkab688 · 2021 · External reference
Biochemical aspects of pathogenic variability in white rust infected Indian mustard
10.1080/00275514.2022.2060007 · 2022 · External reference
fastp: An ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Transcriptomic analysis of the phytopathogenic oomycete Phytophthora cactorum provides insights into infection-related effectors
10.1186/1471-2164-15-980 · 2014 · External reference
Efficient assembly of nanopore reads via highly accurate and intact error correction
10.1038/s41467-020-20236-7 · 2021 · External reference
Genetic diversity within the Albugo candida complex (Peronosporales, Oomycota) inferred from phylogenetic analysis of ITS rDNA and COX2 mtDNA sequences
10.1300/j137v03n03_18 · 2006 · External reference
ntLink: A toolkit for de novo genome assembly scaffolding and mapping using long reads
10.1002/cpz1.733 · 2023 · External reference
Basic compatibility of Albugo candida in Arabidopsis thaliana and Brassica juncea causes broad-spectrum suppression of innate immunity
10.1094/mpmi-21-6-0745 · 2008 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
The carbohydrate-active enzyme database: functions and literature
10.1093/nar/gkab1045 · 2022 · External reference
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10.1073/pnas.1921046117 · 2020 · External reference
LongQC: A quality control tool for third generation sequencing long read data
10.1534/g3.119.400864 · 2020 · External reference
An improved assembly of the Albugo candida Ac2V genome reveals the expansion of the “CCG” class of effectors
10.1094/mpmi-04-21-0075-r · 2022 · External reference
Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus
10.1186/1471-2164-7-245 · 2006 · External reference
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10.1186/s12859-015-0654-5 · 2015 · External reference
Identifying and removing haplotypic duplication in primary genome assemblies
10.1093/bioinformatics/btaa025 · 2020 · External reference
Management of major diseases of Indian mustard through balanced fertilization, cultural practices and fungicides in calcareous soils
10.1007/s40011-016-0749-4 · 2018 · External reference
Draft genome sequencing and secretome profiling of Sclerotinia sclerotiorum revealed effector repertoire diversity and allied broad-host range necrotrophy
10.1038/s41598-022-22028-z · 2022 · External reference
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10.1038/s41467-018-07641-9 · 2018 · External reference
Ancient origin of elicitin gene clusters in Phytophthora genomes
10.1093/molbev/msj039 · 2006 · External reference
InterProScan 5: Genome-scale protein function classification
10.1093/bioinformatics/btu031 · 2014 · External reference
Albugo candida race diversity, ploidy and host‐associated microbes revealed using DNA sequence capture on diseased plants in the field
10.1111/nph.15417 · 2019 · External reference
Rfam 14: Expanded coverage of metagenomic, viral and microRNA families
10.1093/nar/gkaa1047 · 2021 · External reference
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10.1093/nar/28.1.27 · 2000 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana
10.1371/journal.pbio.1001094 · 2011 · External reference
Linkage mapping of genes controlling resistance to white rust (Albugo candida) in Brassica rapa (syn. campestris) and comparative mapping to Brassica napus and Arabidopsis thaliana
10.1139/g01-123 · 2002 · External reference
Canu: Scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
10.1101/gr.215087.116 · 2017 · External reference
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
10.1006/jmbi.2000.4315 · 2001 · External reference
RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
10.1093/nar/gkm160 · 2007 · External reference
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
10.1093/nar/gkae268 · 2024 · External reference
Minimap2: Pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
Fast and accurate short read alignment with Burrows-Wheeler transform
10.1093/bioinformatics/btp324 · 2009 · External reference
De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes
10.1371/journal.pone.0049755 · 2011 · External reference
The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024
10.1093/nar/gkae241 · 2024 · External reference
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
10.1093/molbev/msab199 · 2021 · External reference
Infection strategies and pathogenicity of biotrophic plant fungal pathogens
10.3389/fmicb.2022.799396 · 2022 · External reference
Cloning and characterization of a cDNA encoding an elicitor of Phytophthora parasitica var. nicotianae that shows cellulose-binding and lectin-like activities
10.1094/mpmi.1997.10.9.1045 · 1997 · External reference
Identification and characterization of Nip, necrosis-inducing virulence protein of Erwinia carotovora subsp. carotovora
10.1094/mpmi.2004.17.12.1366 · 2004 · External reference
Potential source of resistance in introgressed, mutant and synthetic Brassica juncea L. lines against diverse isolates of white rust pathogen, Albugo candida
10.3390/agronomy13051215 · 2023 · External reference
IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era
10.1093/molbev/msaa015 · 2020 · External reference
Nucleic acids research database issue
10.1093/nar/gkaa913 · 2020 · External reference
Evolution and genome architecture in fungal plant pathogens
10.1038/nrmicro.2017.143 · 2017 · External reference
Molecular characterization and functional analysis of MgNLP, the sole NPP1 domain–containing protein, from the fungal wheat leaf pathogen Mycosphaerella graminicola
10.1094/mpmi-22-7-0790 · 2009 · External reference
The CAZyome of Phytophthora spp.: a comprehensive analysis of the gene complement coding for carbohydrate-active enzymes in species of the genus Phytophthora
10.1186/1471-2164-11-525 · 2010 · External reference
Molecular mapping reveals two independent loci conferring resistance to Albugo candida in the east European germplasm of oilseed mustard Brassica juncea
10.1007/s00122-010-1297-6 · 2010 · External reference
Novel quorum-sensing-controlled genes in Erwinia carotovora subsp. carotovora: Identification of a fungal elicitor homologue in a soft-rotting bacterium
10.1094/mpmi-18-0343 · 2005 · External reference
Races of Albugo candida (white rust and staghead) on cultivated Cruciferae in Saskatchewan
10.2307/2842800 · 1988 · External reference
Biological races of Albugo candida
1963 · External reference
Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans
10.1186/1471-2164-11-637 · 2010 · External reference
Effectors in plant–microbe interactions
10.1080/17429145.2012.694681 · 2012 · External reference
Analysis of white rust research progress through bibliography
2014 · External reference
Morpho-molecular variability and host reactivity of Albugo candida isolates infecting Brassica juncea genotypes in India
10.1007/s42161-020-00690-4 · 2021 · External reference
Unresolved reference
External reference
EffectorP 3.0: Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
10.1101/2021.07.28.454080 · 2022 · External reference
Correction: Identification and characterisation CRN effectors in Phytophthora capsici shows modularity and functional diversity
10.1371/annotation/90bd45cb-33a7-426f-a928-9ddc351b08cc · 2013 · External reference
AUGUSTUS: ab initio prediction of alternative transcripts
10.1093/nar/gkl200 · 2006 · External reference
The COG database: a tool for genome-scale analysis of protein functions and evolution
10.1093/nar/28.1.33 · 2000 · External reference
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
10.1101/gr.081612.108 · 2008 · External reference
SignalP 6.0 predicts all five types of signal peptides using protein language models
10.1038/s41587-021-01156-3 · 2022 · External reference
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
10.1007/s00122-002-1031-0 · 2003 · External reference
Phylogeny and evolution of plant pathogenic oomycetes—a global overview
10.1007/s10658-013-0366-5 · 2014 · External reference
PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions
10.1093/nar/gkab1037 · 2022 · External reference
Fast and accurate de novo genome assembly from long uncorrected reads
10.1101/gr.214270.116 · 2017 · External reference
Albugo candida
10.1079/9781780644837.0148 · 2015 · External reference
PnSCR82, a small cysteine-rich secretory protein of Phytophthora nicotianae, can enhance defense responses in plants
10.1016/s2095-3119(21)63681-x · 2022 · External reference
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
1990 · External reference
Completing bacterial genome assemblies with multiplex MinION sequencing
10.1099/mgen.0.000132 · 2017 · External reference
Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes
10.4161/psb.3.4.5182 · 2008 · External reference
Genetic variability in Albugo candida pathogen isolates collected from Indian mustard in Northern Madhya Pradesh using RAPD marker analysis
10.5958/2230-7338.2018.00007.1 · 2019 · External reference
A greedy algorithm for aligning DNA sequences
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The SAMBA tool uses long reads to improve the contiguity of genome assemblies
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