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References from Influence of homozygosity on genomic structural variation analyses for predicting ACL rupture risk in the Labrador Retriever and Rottweiler. Local targets link to admitted publications; unresolved targets remain external evidence.
Genome-wide association analysis in dogs implicates 99 loci as risk variants for anterior cruciate ligament rupture
10.1371/journal.pone.0173810 · 2017 · External reference
Bayesian and machine learning models for genomic prediction of anterior cruciate ligament rupture in the canine model
10.1534/g3.120.401244 · 2020 · External reference
Biologically enhanced genome-wide association study provides further evidence for candidate loci and discovers novel loci that influence risk of anterior cruciate ligament rupture in a dog model
10.3389/fgene.2021.593515 · 2021 · External reference
Collagen gene variants previously associated with anterior cruciate ligament injury risk are also associated with joint laxity
10.1177/1941738112446684 · 2012 · External reference
Analysis of copy number variation in dogs implicates genomic structural variation in the development of anterior cruciate ligament rupture
10.1371/journal.pone.0244075 · 2020 · External reference
Relaxation of selective constraint on dog mitochondrial DNA following domestication
10.1101/gr.5117706 · 2006 · External reference
Fast two-stage phasing of large-scale sequence data
10.1016/j.ajhg.2021.08.005 · 2021 · External reference
Second-generation PLINK: rising to the challenge of larger and richer datasets
10.1186/s13742-015-0047-8 · 2015 · External reference
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
10.1093/bioinformatics/btv710 · 2016 · External reference
The legacy of domestication: accumulation of deleterious mutations in the dog genome
10.1093/molbev/msn177 · 2008 · External reference
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
10.1126/science.aal3327 · 2017 · External reference
Chromosome-length genome assembly and structural variations of the primal basenji dog (Canis lupus familiaris) genome
10.1186/s12864-021-07493-6 · 2021 · External reference
GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs
10.1038/s41467-019-13341-9 · 2019 · External reference
Detecting autozygosity through runs of homozygosity: a comparison of three autozygosity detection algorithms
10.1186/1471-2164-12-460 · 2011 · External reference
Influences of rare copy-number variation on human complex traits
10.1016/j.cell.2022.09.028 · 2022 · External reference
NextPolish: a fast and efficient genome polishing tool for long-read assembly
10.1093/bioinformatics/btz891 · 2020 · External reference
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
10.1101/gr.215087.116 · 2017 · External reference
Versatile and open software for comparing large genomes
10.1186/gb-2004-5-2-r12 · 2004 · External reference
Genomic diversity and runs of homozygosity in bernese mountain dogs
10.3390/genes14030650 · 2023 · External reference
The population bottleneck of the Iberian wolf impacted genetic diversity but not admixture with domestic dogs: a temporal genomic approach
10.1111/mec.17171 · 2023 · External reference
BUSCO update: Novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes
10.1093/molbev/msab199 · 2021 · External reference
Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs
10.1073/pnas.1512501113 · 2016 · External reference
Runs of homozygosity in European populations
10.1016/j.ajhg.2008.08.007 · 2008 · External reference
Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
10.1186/s13059-023-03023-7 · 2023 · External reference
Versatile genome assembly evaluation with QUAST-LG
10.1093/bioinformatics/bty266 · 2018 · External reference
Accuracy of genome-enabled polygenic risk score prediction of cruciate ligament rupture risk in the Labrador Retriever
10.3389/fvets.2025.1625953 · 2025 · External reference
Cross-species analysis of genetic architecture and polygenic risk scores for non-contact ACL rupture in dogs and humans
10.1038/s42003-024-07395-9 · 2025 · External reference
Assemblytics: a web analytics tool for the detection of variants from an assembly
10.1093/bioinformatics/btw369 · 2016 · External reference
Genomic analyses of modern dog breeds
10.1007/s00335-011-9387-6 · 2012 · External reference
Runs of homozygosity: current knowledge and applications in livestock
10.1111/age.12526 · 2017 · External reference
Genome assembly forensics: finding the elusive mis-assembly
10.1186/gb-2008-9-3-r55 · 2008 · External reference
Canine morphology: hunting for genes and tracking mutations
10.1371/journal.pbio.1000310 · 2010 · External reference
Short interspersed elements (SINEs) are a major source of canine genomic diversity
10.1101/gr.3765505 · 2005 · External reference
Structural variation during dog domestication: insights from gray wolf and dhole genomes
10.1093/nsr/nwy076 · 2019 · External reference
TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads
10.1093/gigascience/giaa094 · 2020 · External reference
Copy number variation in human health, disease, and evolution
10.1146/annurev.genom.9.081307.164217 · 2009 · External reference
