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References from Immune signatures of common exposures through co-occurrence of T-cell receptors in tens of thousands of donors. Local targets link to admitted publications; unresolved targets remain external evidence.
Successful and maladaptive T cell aging
10.1016/j.immuni.2017.03.010 · 2017 · External reference
Aging of the T cell compartment in mice and humans: from no naive expectations to foggy memories
10.4049/jimmunol.1401174 · 2014 · External reference
Diversity and clonal selection in the human T-cell repertoire
10.1073/pnas.1409155111 · 2014 · External reference
Cytotoxic T cells learn specificity for self H–2 during differentiation in the thymus
10.1038/271251a0 · 1978 · External reference
Binding of immunogenic peptides to Ia histocompatibility molecules
10.1038/317359a0 · 1985 · External reference
Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1
10.1038/364033a0 · 1993 · External reference
Structures of an MHC class II molecule with covalently bound single peptides
10.1126/science.272.5264.1001 · 1996 · External reference
Immunosequencing: applications of immune repertoire deep sequencing
10.1016/j.coi.2013.09.017 · 2013 · External reference
Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity
10.7554/elife.38358 · 2018 · External reference
Machine learning approaches to TCR repertoire analysis
10.3389/fimmu.2022.858057 · 2022 · External reference
History, applications, and challenges of immune repertoire research
10.1007/s10565-018-9426-0 · 2018 · External reference
AIRIVA: a deep generative model of adaptive immune repertoires
2023 · External reference
Immunosequencing reveals diagnostic signatures of chronic viral infection in T cell memory
2015 · External reference
Magnitude and dynamics of the T-cell response to SARS-CoV-2 infection at both individual and population levels
10.3389/fimmu.2024.1488860 · 2024 · External reference
LB17. Immunosequencing of the T-cell receptor repertoire reveals signatures specific for diagnosis and characterization of early lyme disease
10.1093/ofid/ofab466.1653 · 2021 · External reference
Large-scale statistical mapping of T-cell receptor β sequences to Human Leukocyte Antigens
10.1101/2024.04.01.587617 · 2024 · External reference
TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes
10.1371/journal.pcbi.1013767 · 2026 · External reference
Learning predictive signatures of HLA type from T-cell repertoires
10.1371/journal.pcbi.1012724 · 2025 · External reference
Identifying immune signatures of common exposures through co-occurrence of T-cell receptors in tens of thousands of donors
10.1101/2024.03.26.583354 · 2024 · External reference
A catalog of the public T-cell response to cytomegalovirus
10.1101/2024.05.08.593237 · 2024 · External reference
CMV-specific clonal expansion in human Th1 and GZMK+ CD8+ T cells
10.1186/s13059-026-04198-5 · 2026 · External reference
T and B cell responses against Epstein–Barr virus in primary sclerosing cholangitis
10.1038/s41591-025-03692-w · 2025 · External reference
Shared TCRs in peripheral blood offer robust celiac disease classification independent of gluten Intake
10.64898/2025.12.26.696039 · 2025 · External reference
Large-scale statistical mapping of T-cell receptor β sequences to human leukocyte antigens
10.3389/fimmu.2025.1603730 · 2025 · External reference
Nomenclature for factors of the HLA system, 2026
10.1111/tan.70595 · 2026 · External reference
Co-clustering documents and words using Bipartite Spectral Graph Partitioning
10.1145/502512.502550 · 2001 · External reference
UMAP: uniform manifold approximation and projection
10.21105/joss.00861 · 2018 · External reference
Density-based clustering based on hierarchical density estimates
10.1007/978-3-642-37456-2_14 · 2013 · External reference
VDJdb: A curated database of T-cell receptor sequences with known antigen specificity
10.1093/nar/gkx760 · 2018 · External reference
The immune epitope database (IEDB): 2018 update
10.1093/nar/gky1006 · 2019 · External reference
McPAS-TCR: A manually curated catalogue of pathology-associated T cell receptor sequences
10.1093/bioinformatics/btx286 · 2017 · External reference
OLGA: fast computation of generation probabilities of B-and T-cell receptor amino acid sequences and motifs
10.1093/bioinformatics/btz035 · 2019 · External reference
When is “Nearest neighbor” Meaningful
10.1007/3-540-49257-7_15 · 1999 · External reference
A community challenge to benchmark machine learning methods for adaptive immune profiling
10.6084/m9.figshare.31680751 · 2026 · External reference
A fundamental relationship between TCR diversity, repertoire size and systemic clonal expansion: insights from 30,000 TCRβ repertoires
10.3389/fimmu.2025.1707727 · 2026 · External reference
Comparative study of repertoire classification methods reveals data efficiency of k-mer feature extraction
10.3389/fimmu.2022.797640 · 2022 · External reference
Deep learning-based prediction of the selection factors for quantifying selection in immune receptor repertoires
10.1038/s42256-025-01085-9 · 2025 · External reference
Sex differences in tissue-specific immunity and immunology
10.1126/science.adx4381 · 2025 · External reference
When is “Nearest neighbor” Meaningful
10.1007/3-540-49257-7_15 · ExternalCitation · doi-reference
Density-based clustering based on hierarchical density estimates
10.1007/978-3-642-37456-2_14 · ExternalCitation · doi-reference
History, applications, and challenges of immune repertoire research
10.1007/s10565-018-9426-0 · ExternalCitation · doi-reference
Immunosequencing: applications of immune repertoire deep sequencing
10.1016/j.coi.2013.09.017 · ExternalCitation · doi-reference
Successful and maladaptive T cell aging
10.1016/j.immuni.2017.03.010 · ExternalCitation · doi-reference
Cytotoxic T cells learn specificity for self H–2 during differentiation in the thymus
10.1038/271251a0 · ExternalCitation · doi-reference
Binding of immunogenic peptides to Ia histocompatibility molecules
10.1038/317359a0 · ExternalCitation · doi-reference
Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1
10.1038/364033a0 · ExternalCitation · doi-reference
T and B cell responses against Epstein–Barr virus in primary sclerosing cholangitis
10.1038/s41591-025-03692-w · ExternalCitation · doi-reference
Deep learning-based prediction of the selection factors for quantifying selection in immune receptor repertoires
10.1038/s42256-025-01085-9 · ExternalCitation · doi-reference
Diversity and clonal selection in the human T-cell repertoire
10.1073/pnas.1409155111 · ExternalCitation · doi-reference
McPAS-TCR: A manually curated catalogue of pathology-associated T cell receptor sequences
10.1093/bioinformatics/btx286 · ExternalCitation · doi-reference
OLGA: fast computation of generation probabilities of B-and T-cell receptor amino acid sequences and motifs
10.1093/bioinformatics/btz035 · ExternalCitation · doi-reference
VDJdb: A curated database of T-cell receptor sequences with known antigen specificity
10.1093/nar/gkx760 · ExternalCitation · doi-reference
The immune epitope database (IEDB): 2018 update
10.1093/nar/gky1006 · ExternalCitation · doi-reference
LB17. Immunosequencing of the T-cell receptor repertoire reveals signatures specific for diagnosis and characterization of early lyme disease
10.1093/ofid/ofab466.1653 · ExternalCitation · doi-reference
Identifying immune signatures of common exposures through co-occurrence of T-cell receptors in tens of thousands of donors
10.1101/2024.03.26.583354 · ExternalCitation · doi-reference
Large-scale statistical mapping of T-cell receptor β sequences to Human Leukocyte Antigens
10.1101/2024.04.01.587617 · ExternalCitation · doi-reference
A catalog of the public T-cell response to cytomegalovirus
10.1101/2024.05.08.593237 · ExternalCitation · doi-reference
Nomenclature for factors of the HLA system, 2026
10.1111/tan.70595 · ExternalCitation · doi-reference
Structures of an MHC class II molecule with covalently bound single peptides
10.1126/science.272.5264.1001 · ExternalCitation · doi-reference
Sex differences in tissue-specific immunity and immunology
10.1126/science.adx4381 · ExternalCitation · doi-reference
Co-clustering documents and words using Bipartite Spectral Graph Partitioning
10.1145/502512.502550 · ExternalCitation · doi-reference
CMV-specific clonal expansion in human Th1 and GZMK+ CD8+ T cells
10.1186/s13059-026-04198-5 · ExternalCitation · doi-reference
Learning predictive signatures of HLA type from T-cell repertoires
10.1371/journal.pcbi.1012724 · ExternalCitation · doi-reference
TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes
10.1371/journal.pcbi.1013767 · ExternalCitation · doi-reference
UMAP: uniform manifold approximation and projection
10.21105/joss.00861 · ExternalCitation · doi-reference
Comparative study of repertoire classification methods reveals data efficiency of k-mer feature extraction
10.3389/fimmu.2022.797640 · ExternalCitation · doi-reference
Machine learning approaches to TCR repertoire analysis
10.3389/fimmu.2022.858057 · ExternalCitation · doi-reference
Magnitude and dynamics of the T-cell response to SARS-CoV-2 infection at both individual and population levels
10.3389/fimmu.2024.1488860 · ExternalCitation · doi-reference
Large-scale statistical mapping of T-cell receptor β sequences to human leukocyte antigens
10.3389/fimmu.2025.1603730 · ExternalCitation · doi-reference
A fundamental relationship between TCR diversity, repertoire size and systemic clonal expansion: insights from 30,000 TCRβ repertoires
10.3389/fimmu.2025.1707727 · ExternalCitation · doi-reference
Aging of the T cell compartment in mice and humans: from no naive expectations to foggy memories
10.4049/jimmunol.1401174 · ExternalCitation · doi-reference
A community challenge to benchmark machine learning methods for adaptive immune profiling
10.6084/m9.figshare.31680751 · ExternalCitation · doi-reference
Shared TCRs in peripheral blood offer robust celiac disease classification independent of gluten Intake
10.64898/2025.12.26.696039 · ExternalCitation · doi-reference
Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity
10.7554/elife.38358 · ExternalCitation · doi-reference
