Research graph
References from GerAB residues predicted to interact with water based on MD simulations mediate germinosome stability in Bacillus subtilis spores. Local targets link to admitted publications; unresolved targets remain external evidence.
Investigation of molecular details of a bacterial cationic amino acid transporter (GkApcT) during arginine transportation using molecular dynamics simulation and umbrella sampling techniques
10.1007/s00894-023-05670-w · 2023 · External reference
Insight into the properties of cardiolipin containing bilayers from nolecular dynamics simulations, using a hybrid all-atom/united-atom force field
10.1021/ct200849k · 2012 · External reference
Dormant spores sense amino acids through the B subunits of their germination receptors
10.1038/s41467-021-27235-2 · 2021 · External reference
Predicting the structure and dynamics of membrane protein GerAB from Bacillus subtilis
10.3390/ijms22073793 · 2021 · External reference
Canonical sampling through velocity rescaling
10.1063/1.2408420 · 2007 · External reference
10.1007/978-3-642-16712-6_772
10.1007/978-3-642-16712-6_772 · 2013 · External reference
Properties of aged spores of Bacillus subtilis
10.1128/jb.00231-19 · 2019 · External reference
Molecular dynamics simulations on solvated biomolecular systems: the particle mesh Ewald method leads to stable trajectories of DNA, RNA, and proteins
10.1021/ja00119a045 · 1995 · External reference
GerAB residues predicted to interfere with water passage based on steered molecular dynamics are key to germinosome functionality
10.3389/fmicb.2025.1656964 · 2025 · External reference
Water permeation through the sodium-dependent galactose cotransporter vSGLT
10.1016/j.bpj.2010.08.055 · 2010 · External reference
Bacillus spore germination: knowns, unknowns and what we need to learn
10.1016/j.cellsig.2020.109729 · 2020 · External reference
Amino acid residues in the GerAB protein important in the function and assembly of the alanine spore germination receptor of Bacillus subtilis 168
10.1128/jb.01397-10 · 2011 · External reference
Principles of alternating access in LeuT-fold transporters: commonalities and divergences
10.1016/j.jmb.2022.167746 · 2022 · External reference
Bacterial spore germination receptors are nutrient-gated ion channels
10.1126/science.adg9829 · 2023 · External reference
Germination proteins in the inner membrane of dormant Bacillus subtilis spores colocalize in a discrete cluster
10.1111/j.1365-2958.2011.07753.x · 2011 · External reference
Canonical dynamics: equilibrium phase-space distributions
10.1103/physreva.31.1695 · 1985 · External reference
Template-based protein structure modeling using the RaptorX web server
10.1038/nprot.2012.085 · 2012 · External reference
CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM simulations using the CHARMM36 additive force field
10.1021/acs.jctc.5b00935 · 2016 · External reference
The EMBL-EBI job dispatcher sequence analysis tools framework in 2024
10.1093/nar/gkae241 · 2024 · External reference
Spore germination
10.1128/microbiolspec.tbs-0014-2012 · 2015 · External reference
Effect of amino acid substitutions in the GerAA protein on the function of the alanine-responsive germinant receptor of Bacillus subtilis spores
10.1128/jb.01398-10 · 2011 · External reference
Molecular dynamics of water in the neighborhood of aquaporins
10.1007/s00249-012-0880-y · 2013 · External reference
Role of Ger proteins in nutrient and nonnutrient triggering of spore germination in Bacillus subtilis
10.1128/jb.182.9.2513-2519.2000 · 2000 · External reference
Polymorphic transitions in single crystals: a new molecular dynamics method
10.1063/1.328693 · 1981 · External reference
Membrane proteins: aquaporins—channels without ions
10.1016/s0960-9822(01)00009-4 · 2001 · External reference
Germination of spores of the orders Bacillales and Clostridiales
10.1146/annurev-micro-090816-093558 · 2016 · External reference
Structure and mechanism of a Na+-independent amino acid transporter
10.1126/science.1176088 · 2009 · External reference
Amino acid transporters: éminences grises of nutrient signalling mechanisms?
10.1042/bst0370237 · 2009 · External reference
Visualization of germinosomes and the inner membrane in Bacillus subtilis spores
10.3791/59388 · 2019 · External reference
