Research graph
References from Multi-omics characterization of a rhizosphere-derived Bacillus cereus CBS-B5 strain reveals genomic stability, metabolic versatility, and biosafety-related genomic features for agricultural applications. Local targets link to admitted publications; unresolved targets remain external evidence.
Reduction of heavy metals bioaccumulation in sorghum and its rhizosphere by heavy metals-tolerant bacterial consortium
10.1016/j.bcab.2021.101911 · 2021 · External reference
Genomic analysis of endophytic Bacillus cereus T4S and its plant growth-promoting traits
10.3390/plants10091776 · External reference
Plant growth-promoting root-colonizing bacterial endophytes
10.1016/j.rhisph.2021.100433 · External reference
Role of Bacillus cereus in improving the growth and phytoextractability of Brassica nigra (L.) K. Koch in chromium contaminated soil
10.3390/molecules26061569 · 2021 · External reference
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the comprehensive antibiotic resistance database
10.1093/nar/gkac920 · 2023 · External reference
Effect of potassium solubilizing bacteria (Bacillus cereus) on growth and yield of potato
10.1080/01904167.2020.1822399 · 2021 · External reference
Comparative genomic analysis reveals the emergence of ST-231 and ST-395 Klebsiella pneumoniae strains associated with the high transmissibility of blakpc plasmids
10.3390/microorganisms11102411 · 2023 · External reference
Exploring the identity and properties of two Bacilli strains and their potential to alleviate drought and heavy metal stress
10.3390/horticulturae9010046 · 2023 · External reference
Plant growth-promoting rhizobacteria: context, mechanisms of action, and roadmap to commercialization of biostimulants for sustainable agriculture
10.3389/fpls.2018.01473 · 2018 · External reference
Plant growth promoting microorganisms can improve germination, seedling growth and potassium uptake of soybean under drought and salt stress
10.1007/s10725-019-00556-5 · 2020 · External reference
Pan-genome and phylogeny of Bacillus cereus sensu lato
10.1101/119420 · 2017 · External reference
Bacillus subtilis biofilm induction by plant polysaccharides
10.1073/pnas.1218984110 · 2013 · External reference
Environmental factors influencing the development and spread of antibiotic resistance
10.1093/femsre/fux053 · 2018 · External reference
Tackling antibiotic resistance: the environmental framework
10.1038/nrmicro3439 · 2015 · External reference
AntiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation
10.1093/nar/gkaf334 · 2025 · External reference
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
10.1038/nbt.3893 · 2017 · External reference
Unresolved reference
1957 · External reference
mobileOG-db: a manually curated database of protein families mediating the life cycle of bacterial mobile genetic elements
10.1128/aem.00991-22 · 2022 · External reference
Sensitive protein alignments at tree-of-life scale using diamond
10.1038/s41592-021-01101-x · 2021 · External reference
eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale
10.1093/molbev/msab293 · 2021 · External reference
Unresolved reference
2017 · External reference
Diversity of Bacillus cereus group strains is reflected in their broad range of pathogenicity and diverse ecological lifestyles
10.1111/1574-6941.12110 · 2013 · External reference
10.1007/s00284-016-1172-z
10.1007/s00284-016-1172-z · 2017 · External reference
GTDB-Tk v2: memory friendly classification with the genome taxonomy database
10.1093/bioinformatics/btac672 · 2022 · External reference
VFDB 2016: hierarchical and refined dataset for big data analysis–10 years on
10.1093/nar/gkv1239 · 2016 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Whole genome sequencing for studying Bacillus anthracis from an outbreak in the abruzzo region of italy
10.3390/microorganisms8010087 · 2020 · External reference
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning
10.1038/s41592-023-01940-w · 2023 · External reference
Unresolved reference
2016 · External reference
Crisprcasfinder, an update of crisrfinder, includes a portable version, enhanced performance and integrates search for cas proteins
10.1093/nar/gky425 · 2018 · External reference
Genome plasticity shapes the ecology and evolution of phocaeicola dorei and phocaeicola vulgatus
10.1038/s41598-024-59148-7 · 2024 · External reference
10.3390/toxins13020098
10.3390/toxins13020098 · 2021 · External reference
Draft genome sequence of Bacillus cereus 905, a plant growth-promoting rhizobacterium of wheat
10.1128/genomea.00489-16 · 2016 · External reference
Use of repetitive DNA sequences and the PCR to differentiate escherichia coli isolates from human and animal sources
10.1128/aem.66.6.2572-2577.2000 · 2000 · External reference
10.1007/978-3-319-13401-7
10.1007/978-3-319-13401-7 · 2015 · External reference
Phytohormones and beneficial microbes: essential components for plants to balance stress and fitness
10.3389/fmicb.2017.02104 · 2017 · External reference
10.1111/j.1574-6968.2006.00320.x
10.1111/j.1574-6968.2006.00320.x · 2006 · External reference
The Bacillus cereus group: Bacillus species with pathogenic potential
10.1128/microbiolspec.gpp3-0032-2018 · 2019 · External reference
10.1016/j.plaphy.2022.08.016
10.1016/j.plaphy.2022.08.016 · 2022 · External reference
Orthofinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
Incidence, toxin gene profile, antibiotic resistance and antibacterial activity of allium parvum and allium cepa extracts on Bacillus cereus isolated from fermented millet-based food
10.1016/j.lwt.2022.113314 · 2022 · External reference
The NCBI taxonomy database
10.1093/nar/gkr1178 · 2012 · External reference
The InhA2 metalloprotease of Bacillus thuringiensis strain 407 is required for pathogenicity in insects infected via the oral route
10.1128/jb.184.12.3296-3304.2002 · 2002 · External reference
Biofilms: an emergent form of bacterial life
10.1038/nrmicro.2016.94 · 2016 · External reference
Mobile genetic elements: the agents of open source evolution
10.1038/nrmicro1235 · 2005 · External reference
Microbial community abundance and structure are determinants of soil organic matter mineralisation in the presence of labile carbon
10.1016/j.soilbio.2011.04.016 · 2011 · External reference
Plant growth-promoting bacteria: mechanisms and applications
10.6064/2012/963401 · 2012 · External reference
Proksee: in-depth characterization and visualization of bacterial genomes
10.1093/nar/gkad326 · 2023 · External reference
Using plant growth-promoting rhizobacteria (PGPR) to improve plant growth
10.1016/j.ecoleng.2015.07.019 · 2015 · External reference
Bacillus cytotoxicus sp. nov. is a novel thermotolerant species of the Bacillus cereus group occasionally associated with food poisoning
10.1099/ijs.0.030627-0 · 2013 · External reference
QUAST: quality assessment tool for genome assemblies
10.1093/bioinformatics/btt086 · 2013 · External reference
Biofertilizer: a novel formulation for improving wheat growth, physiology and yield
2016 · External reference
Complex formation between NheB and NheC is necessary to induce cytotoxic activity by the three-component Bacillus cereus Nhe enterotoxin
10.1371/journal.pone.0063104 · 2013 · External reference
Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis–one species on the basis of genetic evidence
10.1128/aem.66.6.2627-2630.2000 · 2000 · External reference
The use of bacterial spore formers as probiotics
10.1016/j.femsre.2004.12.001 · 2005 · External reference
10.7717/peerj.13131
10.7717/peerj.13131 · 2022 · External reference
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
10.1038/s41467-018-07641-9 · 2018 · External reference
Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments
10.1007/s002030050649 · 1998 · External reference
Display of proteins on bacillus subtilis endospores
10.1007/s00018-009-0067-6 · 2009 · External reference
Pan-genome analysis of Bacillus for microbiome profiling
10.1038/s41598-017-11385-9 · 2017 · External reference
Comparative genomic analysis reveals genetic features related to the virulence of Bacillus cereus FORC_013
10.1186/s13099-017-0175-z · 2017 · External reference
Root colonization and growth promotion of soybean, wheat and chinese cabbage by Bacillus cereus YL6
10.1371/journal.pone.0200181 · 2018 · External reference
10.3390/ijms24119759
10.3390/ijms24119759 · 2023 · External reference
“Growth and nutrition of halophilic bacteria,”
10.1201/9781003069140-4 · 2020 · External reference
Asparagine in plants
10.1111/j.1744-7348.2006.00104.x · 2007 · External reference
Coenzyme a: back in action
10.1016/j.plipres.2005.04.001 · 2005 · External reference
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
10.1093/nar/gkae268 · 2024 · External reference
Effects of plant growth-promoting rhizobacteria on the physioecological characteristics and growth of walnut seedlings under drought stress
10.3390/agronomy13020290 · 2023 · External reference
Genomic insights into the taxonomic status of the Bacillus cereus group
10.1038/srep14082 · 2015 · External reference
Bacillus and relatives in foodborne illness
10.1111/j.1365-2672.2011.05204.x · 2012 · External reference
The shikimate pathway and aromatic amino acid biosynthesis in plants
10.1146/annurev-arplant-042811-105439 · 2012 · External reference
An updated evolutionary classification of CRISPR-Cas systems
10.1038/nrmicro3569 · 2015 · External reference
What is a resistance gene? Ranking risk in resistomes
10.1038/nrmicro3399 · 2015 · External reference
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
10.1111/1574-6976.12028 · 2013 · External reference
Siderophore-based iron acquisition and pathogen control
10.1128/mmbr.00012-07 · 2007 · External reference
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
10.1093/molbev/msaa015 · 2020 · External reference
Siderophores: structure and function of microbial iron transport compounds
10.1074/jbc.270.45.26723 · 1995 · External reference
Resistance of bacillus endospores to extreme terrestrial and extraterrestrial environments
10.1128/mmbr.64.3.548-572.2000 · 2000 · External reference
Efflux-mediated heavy metal resistance in prokaryotes
10.1016/s0168-6445(03)00048-2 · 2003 · External reference
Production and partial characterization of dehairing protease from Bacillus cereus MCM B-326
10.1016/j.biortech.2006.05.003 · 2007 · External reference
Bacillus lipopeptides: versatile weapons for plant disease biocontrol
10.1016/j.tim.2007.12.009 · 2008 · External reference
The contribution of genome mining strategies to the understanding of active principles of PGPR strains
10.1093/femsec/fiw249 · 2017 · External reference
Bedtools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · 2010 · External reference
Genomics of the Bacillus cereus group of organisms
10.1016/j.fmrre.2004.12.005 · 2005 · External reference
MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies
10.1099/mgen.0.000206 · 2018 · External reference
Phosphate solubilizing bacteria and their role in plant growth promotion
10.1016/s0734-9750(99)00014-2 · 1999 · External reference
Novel Bacillus cereus strain, ALT1, enhance growth and strengthens the antioxidant system of soybean under cadmium stress
10.3390/agronomy11020404 · 2021 · External reference
“Applications and patents of Bacillus spp. in agriculture,”
10.1007/978-981-13-7466-1_8 · 2019 · External reference
The PEP–pyruvate–oxaloacetate node as the switch point for carbon flux distribution in bacteria: we dedicate this paper to rudolf K. Thauer, director of the Max-Planck-Institute for Terrestrial Microbiology in Marburg, Germany, on the occasion of his 65th birthday
10.1016/j.femsre.2004.11.002 · 2005 · External reference
Prokka: rapid prokaryotic genome annotation
10.1093/bioinformatics/btu153 · 2014 · External reference
10.5171/2013.446006
10.5171/2013.446006 · 2013 · External reference
Rhizobacterium Bacillus cereus 2K alleviates aluminum toxicity in Panax notoginseng through metal immobilization and auxin-mediated growth promotion
10.1016/j.indcrop.2025.121877 · 2025 · External reference
Isolation and molecular characterization of potential plant growth promoting Bacillus cereus GGBSTD1 and Pseudomonas spp. GGBSTD3 from vermisources
10.1155/2014/248591 · 2014 · External reference
Horizontal gene transfer: building the web of life
10.1038/nrg3962 · 2015 · External reference
From soil to gut: Bacillus cereus and its food poisoning toxins
10.1111/j.1574-6976.2008.00112.x · 2008 · External reference
Quantification of biofilm in microtiter plates: overview of testing conditions and practical recommendations for assessment of biofilm production by staphylococci
10.1111/j.1600-0463.2007.apm_630.x · 2007 · External reference
Oxidative stress
10.1016/s1369-5274(99)80033-2 · 1999 · External reference
10.1007/s10482-008-9275-6
10.1007/s10482-008-9275-6 · 2008 · External reference
NCBI prokaryotic genome annotation pipeline
10.1093/nar/gkw569 · 2016 · External reference
Producing polished prokaryotic pangenomes with the panaroo pipeline
10.1186/s13059-020-02090-4 · 2020 · External reference
Production of phenyllactic acid by lactic acid bacteria: an approach to the selection of strains contributing to food quality and preservation
10.1111/j.1574-6968.2004.tb09494.x · 2004 · External reference
“Halophilic and halotolerant micro-organisms from soils,”
10.1007/978-3-540-74231-9_5 · 2008 · External reference
Distribution of repetitive DNA sequences in eubacteria and application to finerpriting of bacterial enomes
10.1093/nar/19.24.6823 · 1991 · External reference
Sticking together: building a biofilm the bacillus subtilis way
10.1038/nrmicro2960 · 2013 · External reference
Enhancement of drought stress tolerance in crops by plant growth promoting rhizobacteria
10.1016/j.micres.2015.12.003 · 2016 · External reference
Two distinct manganese-containing superoxide dismutase genes in Bacillus cereus: their physiological characterizations and roles in surviving in wheat rhizosphere
10.1111/j.1574-6968.2007.00759.x · 2007 · External reference
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
10.1371/journal.pcbi.1005595 · 2017 · External reference
FastQ screen: a tool for multi-genome mapping and quality control
10.12688/f1000research.15931.1 · 2018 · External reference
Comparative genomic and functional analyses of four sequenced Bacillus cereus genomes reveal conservation of genes relevant to plant-growth-promoting traits
10.1038/s41598-018-35300-y · 2018 · External reference
Bacillus cereus cytotoxin K triggers gasdermin D-dependent pyroptosis
10.1038/s41420-022-01091-5 · 2022 · External reference
HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers
10.1186/1471-2164-15-717 · 2014 · External reference
