Research graph
References from Sampling method influences hemolymph bacterial communities in the eastern oyster, Crassostrea virginica. Local targets link to admitted publications; unresolved targets remain external evidence.
Comparative evaluation of specimen type and processing conditions for studying oyster microbiomes.
10.3389/fmicb.2024.1504487 · 2025 · External reference
A new method for non-parametric multivariate analysis of variance.
10.1111/j.1442-9993.2001.01070.pp.x · 2001 · External reference
Oyster reefs at risk and recommendations for conservation. restoration, and management.
10.1525/bio.2011.61.2.5 · 2011 · External reference
Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies
10.1186/s40168-018-0543-z · 2018 · External reference
Controlling the false discovery rate: A practical and powerful approach to multiple testing.
10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference
A review of recent information on the Haplosporidia, with special reference to Haplosporidium nelsoni (MSX disease).
10.1051/alr:2004056 · 2004 · External reference
Microbial education plays a crucial role in harnessing the beneficial properties of microbiota for infectious disease protection in Crassostrea gigas.
10.1038/s41598-024-76096-4 · 2024 · External reference
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data.
10.1186/s40168-018-0605-2 · 2018 · External reference
Exploring the hologenome concept in marine bivalvia: Haemolymph microbiota as a pertinent source of probiotics for aquaculture.
10.1111/1574-6968.12308 · 2014 · External reference
Cross-talk and mutual shaping between the immune system and the microbiota during an oyster’s life.
10.1098/rstb.2023.0065 · 2024 · External reference
Arcobacter lekithochrous sp. nov., isolated from a molluscan hatchery.
10.1099/ijsem.0.001809 · 2017 · External reference
Multiple comparisons using rank sums.
10.1080/00401706.1964.10490181 · 1964 · External reference
Oyster hemolymph is a complex and dynamic ecosystem hosting bacteria, protists and viruses.
10.1186/s42523-020-00032-w · 2020 · External reference
MUSCLE: Multiple sequence alignment with high accuracy and high throughput.
10.1093/nar/gkh340 · 2004 · External reference
Search and clustering orders of magnitude faster than BLAST.
10.1093/bioinformatics/btq461 · 2010 · External reference
Error filtering, pair assembly and error correction for next-generation sequencing reads.
10.1093/bioinformatics/btv401 · 2015 · External reference
UCHIME improves sensitivity and speed of chimera detection.
10.1093/bioinformatics/btr381 · 2011 · External reference
The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. 2. Nucleotide sequences of products from partial enzymatic hydrolysis.
10.1016/s0300-9084(72)80007-5 · 1972 · External reference
Critical relevance of stochastic effects on low-bacterial-biomass 16S rRNA Gene Analysis.
10.1128/mbio.00258-20 · 2020 · External reference
Characterization of Vibrio mediterranei isolates as causative agents of vibriosis in marine bivalves.
10.1128/spectrum.04923-22 · 2023 · External reference
Vibrio crassostreae sp. nov., isolated from the haemolymph of oysters (Crassostrea gigas).
10.1099/ijs.0.63232-0 · 2004 · External reference
Evidence for the involvement of pathogenic bacteria in summer mortalities of the pacific oyster Crassostrea gigas.
10.1007/s00248-006-9061-9 · 2007 · External reference
Screening of Vibrio isolates to develop an experimental infection model in the Pacific oyster Crassostrea gigas.
10.3354/dao059049 · 2004 · External reference
Bivalve microbiomes are shaped by host species, size, parasite infection, and environment.
10.7717/peerj.18082 · 2024 · External reference
Microbiome flexibility enhances the resilience of the potentially invasive coral Tubastraea aurea to abrupt environmental changes: Insights from a shallow water hydrothermal vent transplantation study.
10.1016/j.scitotenv.2024.176792 · 2024 · External reference
Discovery of a phylogenetically novel tropical marine Gammaproteobacteria elucidated from assembled genomes and the proposed transfer of the genus Umboniibacter from the family Cellvibrionaceae to Umboniibacteraceae fam. Nov.
10.3389/fmicb.2025.1437936 · 2025 · External reference
UFBoot2: Improving the ultrafast bootstrap approximation.
10.1093/molbev/msx281 · 2018 · External reference
A simple sequentially rejective multiple test procedure.
1979 · External reference
ModelFinder: Fast model selection for accurate phylogenetic estimates.
10.1038/nmeth.4285 · 2017 · External reference
Unresolved reference
2010 · External reference
Functional reorganization and taxonomic shifts in the symbiotic microbiota of the temperate soft coral Eleutherobia rubra under heat stress.
10.3389/fmars.2025.1635356 · 2025 · External reference
Analysis of stomach and gut microbiomes of the eastern oyster (Crassostrea virginica) from coastal louisiana. USA.
10.1371/journal.pone.0051475 · 2012 · External reference
Pearl oyster bacterial community structure is governed by location and tissue-type, but Vibrio species are shared among oyster tissues.
10.3389/fmicb.2021.723649 · 2021 · External reference
Validating digital polymerase chain reaction for 16S rRNA gene amplification from low biomass environmental samples.
10.1093/ismeco/ycaf115 · 2025 · External reference
Use of ranks in one-criterion variance analysis.
10.1080/01621459.1952.10483441 · 1952 · External reference
Mapping the green-lipped mussel (Perna canaliculus) microbiome: A multi-tissue analysis of bacterial and fungal diversity.
10.1007/s00284-021-02758-5 · 2022 · External reference
Multigroup analysis of compositions of microbiomes with covariate adjustments and repeated measures.
10.1038/s41592-023-02092-7 · 2024 · External reference
Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection.
10.1038/ismej.2014.160 · 2015 · External reference
Spatial and temporal dynamics of pacific oyster hemolymph microbiota across multiple scales.
10.3389/fmicb.2016.01367 · 2016 · External reference
Quantitative and qualitative β diversity measures lead to different insights into factors that structure microbial communities.
10.1128/aem.01996-06 · 2007 · External reference
Quantifying bias introduced by sample collection in relative and absolute microbiome measurements.
10.1038/s41587-023-01754-3 · 2024 · External reference
Microbiota dysbiosis in Mytilus chilensis is induced by hypoxia, leading to molecular and functional consequences.
10.3390/microorganisms13040825 · 2025 · External reference
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA.
10.1128/aem.59.3.695-700.1993 · 1993 · External reference
Unresolved reference
2004 · External reference
IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
10.1093/molbev/msu300 · 2015 · External reference
A global analysis of climate change and the impacts on oyster diseases.
10.3390/su151712775 · 2023 · External reference
Changes in bacterial densities and hemocyte parameters in eastern oysters, Crassostrea virginica, affected by juvenile oyster disease.
10.1051/alr:1996018 · 1996 · External reference
Sustainable oyster aquaculture, water quality improvement, and ecosystem service value potential in Maryland Chesapeake Bay.
10.2983/035.039.0208 · 2020 · External reference
Revisiting the taxonomy of the genus Arcobacter: Getting order from the chaos.
10.3389/fmicb.2018.02077 · 2018 · External reference
Microbiome analysis reveals diversity and function of Mollicutes associated with the Eastern Oyster, Crassostrea virginica.
10.1128/msphere.00227-21 · 2021 · External reference
The dormant blood microbiome in chronic, inflammatory diseases.
10.1093/femsre/fuv013 · 2015 · External reference
Absolute quantification of microbial taxon abundances.
10.1038/ismej.2016.117 · 2017 · External reference
Hemolymph microbiota and host immunity of crustaceans and mollusks.
10.1093/ismejo/wraf133 · 2025 · External reference
How much do rRNA gene surveys underestimate extant bacterial diversity?
10.1128/aem.00014-18 · 2018 · External reference
Bacterial 16S rRNA gene analysis revealed that bacteria related to Arcobacter spp. constitute an abundant and common component of the oyster microbiota (Tiostrea chilensis).
10.1007/s00248-002-1063-7 · 2002 · External reference
GenBank 2025 update.
10.1093/nar/gkae1114 · 2025 · External reference
History of the virginia oyster fishery, Chesapeake Bay, USA.
10.3389/fmars.2017.00127 · 2017 · External reference
Oyster reefs as natural breakwaters mitigate shoreline loss and facilitate fisheries.
10.1371/journal.pone.0022396 · 2011 · External reference
Statsmodels: Econometric and Statistical Modeling with Python
10.25080/majora-92bf1922-011 · 2010 · External reference
A mathematical theory of communication.
10.1002/j.1538-7305.1948.tb01338.x · 1948 · External reference
Measurement of diversity.
10.1038/163688a0 · 1949 · External reference
Farmed oyster mortality follows consistent Vibrio community reorganization.
10.1128/msystems.01078-25 · 2025 · External reference
Effects of repeated hemolymph sampling from adductor muscles of relaxed Pacific oysters (Magallana gigas).
10.1371/journal.pone.0333208 · 2025 · External reference
The microbiome of diabetic foot ulcers: A comparison of swab and tissue biopsy wound sampling techniques using 16S rRNA gene sequencing.
10.1186/s12866-020-01843-2 · 2020 · External reference
Molecular assessment of oyster microbiomes and viromes reveals their potential as pathogen and ecological sentinels.
10.1016/j.onehlt.2025.100973 · 2025 · External reference
Prokaryotic microbiota outperform eukaryotic microbiota in differentiating between infection states of iconic diseases of two commercial oyster species.
10.1016/j.aquaculture.2024.741363 · 2025 · External reference
Persistence, seasonal dynamics and pathogenic potential of Vibrio communities from pacific oyster hemolymph.
10.1371/journal.pone.0094256 · 2014 · External reference
10.1007/978-3-319-24277-4
10.1007/978-3-319-24277-4 · 2016 · External reference
Introducing EzBioCloud: A taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.
10.1099/ijsem.0.001755 · 2017 · External reference
Hemolymph microbiomes of three aquatic invertebrates as revealed by a new cell extraction method.
10.1128/aem.02824-17 · 2018 · External reference
A network meta-analysis on comparison of invasive and non-invasive sampling methods to characterize intestinal microbiota of birds.
10.1016/j.avrs.2023.100086 · 2023 · External reference
