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References from The syntrophic network of pyrene degradation by the synthetic halophilic consortium PES. Local targets link to admitted publications; unresolved targets remain external evidence.
Production and characterization of bioemulsifiers from Acinetobacter strains isolated from lipid-rich wastewater.
10.1007/s13205-019-1683-y · 2019 · External reference
Biodegradation of selected hydrocarbons by novel bacterial strains isolated from contaminated Arabian Gulf sediment.
10.1038/s41598-020-78733-0 · 2020 · External reference
A gene expression study of the activities of aromatic ring-cleavage dioxygenases in mycobacterium gilvum PYR-GCK to changes in salinity and pH during pyrene degradation.
10.1371/journal.pone.0058066 · 2013 · External reference
A critical review of polycyclic aromatic hydrocarbons and their adverse effects on human health: Insights from the past six years.
10.1186/s12302-026-01367-y · 2026 · External reference
Characterization of halophilic bacteria capable of efficiently biodegrading the high-molecular-weight polycyclic aromatic hydrocarbon pyrene.
10.1089/ees.2017.0244 · 2018 · External reference
The critical structural role of a highly conserved histidine residue in group II amino acid decarboxylases.
10.1016/s0014-5793(03)01079-2 · 2003 · External reference
Real-time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDalpha) genes from gram positive and gram negative bacteria in soil and sediment samples.
10.1016/j.mimet.2008.01.009 · 2008 · External reference
Cleaning oil-contaminated vessel by emulsan producers (autochthonous bacteria).
2010 · External reference
Polycyclic aromatic hydrocarbon degradation and biosurfactant production by a newly isolated Pseudomonas sp. strain from used motor oil-contaminated soil.
10.1016/j.ibiod.2017.05.006 · 2017 · External reference
Review on the contamination and remediation of polycyclic aromatic hydrocarbons (PAHs) in coastal soil and sediments.
10.1016/j.envres.2021.112423 · 2022 · External reference
Recent advances in Emulsan production, purification, and application: Exploring bioemulsifiers unique potentials.
10.1016/j.ijbiomac.2024.133672 · 2024 · External reference
Bioemulsifier production by acinetobacter venetianus AMO1502: Potential for bioremediation and environmentally friendly applications.
10.1016/j.marpolbul.2024.116436 · 2024 · External reference
Modifications and applications of the acinetobacter venetianus RAG-1 exopolysaccharide, the emulsan complex and its components.
10.1007/s00253-008-1664-2 · 2008 · External reference
Petroleum contaminated oil sludge degradation by defined consortium: Influence of biosurfactant production.
10.1007/s40011-016-0778-z · 2018 · External reference
Characterization of halophilic bacteria Vreelandella piezotolerans DM1 on biodegradation of polyaromatic hydrocarbons and its pathway.
10.1007/s11270-025-08449-2 · 2025 · External reference
Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B.
10.1128/jb.183.12.3689-3703.2001 · 2001 · External reference
Production and structural characterization of eco-friendly bioemulsifier SC04 from Saccharomyces cerevisiae strain MYN04 with potential applications.
10.1186/s12934-023-02186-z · 2023 · External reference
Physiology and comparative genomics of the haloalkalitolerant and hydrocarbonoclastic marine strain rhodococcus ruber MSA14.
10.1007/s00203-024-04050-z · 2024 · External reference
Degradation of phenanthrene by consortium 5H under hypersaline conditions.
10.1016/j.envpol.2022.119730 · 2022 · External reference
Biodegradation of high molecular weight hydrocarbons under saline condition by halotolerant Bacillus subtilis and its mixed cultures with Pseudomonas species.
10.1038/s41598-022-17001-9 · 2022 · External reference
Highly accurate protein structure prediction with alphaFold.
10.1038/s41586-021-03819-2 · 2021 · External reference
Bioremediation by Brevibacterium sediminis: a prospective pyrene degrading agent to eliminate environmental polycyclic aromatic hydrocarbons.
10.1007/s11274-024-04178-6 · 2024 · External reference
Complete and integrated pyrene degradation pathway in mycobacterium vanbaalenii PYR-1 based on systems biology.
10.1128/jb.01310-06 · 2007 · External reference
Biodegradation of pyrene and phenanthrene by bacterial consortium and evaluation of role of surfactant.
10.14715/cmb/2014.60.5.5 · 2014 · External reference
Polycyclic aromatic hydrocarbon metabolic network in mycobacterium vanbaalenii PYR-1.
10.1128/jb.00215-11 · 2011 · External reference
Mechanism of phenanthrene degradation by the halophilic Pelagerythrobacter sp.
10.1016/j.chemosphere.2024.141175 · 2024 · External reference
Effects of salinity on the biodegradation of polycyclic aromatic hydrocarbons in oilfield soils emphasizing degradation genes and soil enzymes.
10.3389/fmicb.2021.824319 · 2022 · External reference
PAHE, a functional marker gene for polycyclic aromatic hydrocarbon-degrading bacteria.
10.1128/aem.02399-18 · 2019 · External reference
Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS.
10.1128/aem.01274-06 · 2006 · External reference
Human impacts on polycyclic aromatic hydrocarbon distribution in Chinese intertidal zones.
10.1038/s41893-020-0565-y · 2020 · External reference
Salinity exacerbates oil contamination effects in mangroves.
10.1007/s11356-021-15450-9 · 2021 · External reference
Analysis of the wee gene cluster responsible for the biosynthesis of the polymeric bioemulsifier from the oil-degrading strain acinetobacter lwoffii RAG-1.
10.1099/00221287-147-7-1937 · 2001 · External reference
Pyrene biodegradation and proteomic analysis in Achromobacter xylosoxidans.
10.1016/j.ibiod.2018.03.014 · 2018 · External reference
Ring-hydroxylating dioxygenase (RHD) expression in a microbial community during the early response to oil pollution.
10.1111/j.1574-6941.2011.01270.x · 2012 · External reference
Engineering Pseudomonas putida to produce rhamnolipid biosurfactants for promoting phenanthrene biodegradation by a two-species microbial consortium.
10.1128/spectrum.00910-22 · 2022 · External reference
A review of pyrene bioremediation using Mycobacterium strains in a different matrix.
10.3390/fermentation8060260 · 2022 · External reference
HADEG: A curated hydrocarbon aerobic degradation enzymes and genes database.
10.1016/j.compbiolchem.2023.107966 · 2023 · External reference
Proteinsplus: Interactive analysis of protein-ligand binding interfaces.
10.1093/nar/gkaa235 · 2020 · External reference
Isolation and characterization of distinctive pyrene-degrading bacteria from an uncontaminated soil.
10.1007/s10532-023-10065-y · 2024 · External reference
Bacillus B3 degrades pyrene in oil-contaminated soil via a novel phthalate pathway and efficient bioremediation.
10.1016/j.eti.2025.104509 · 2025 · External reference
Autodock vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.
10.1002/jcc.21334 · 2010 · External reference
Bioemulsifiers are not biosurfactants and require different screening approaches.
10.3389/fmicb.2015.00245 · 2015 · External reference
Metabolism of pyrene through phthalic acid pathway by enriched bacterial consortium composed of Pseudomonas.
10.1007/s13205-017-0598-8 · 2017 · External reference
DoGSiteScorer: A web server for automatic binding site prediction, analysis and druggability assessment.
10.1093/bioinformatics/bts310 · 2012 · External reference
Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium.
10.1016/j.jhazmat.2017.08.062 · 2018 · External reference
Salt adaptation and evolutionary implication of a nah-related PAHS dioxygenase cloned from a halophilic phenanthrene degrading consortium.
10.1038/s41598-017-12979-z · 2017 · External reference
Salinity effect on the metabolic pathway and microbial function in phenanthrene degradation by a halophilic consortium.
10.1186/s13568-018-0594-3 · 2018 · External reference
Absence of the nahG-like gene caused the syntrophic interaction between marinobacter and other microbes in PAH-degrading process.
10.1016/j.jhazmat.2019.121387 · 2020 · External reference
The conserved domain database in 2023.
10.1093/nar/gkac1096 · 2023 · External reference
Polycyclic Aromatic Hydrocarbon (PAH) Degradation Pathways of the Obligate Marine PAH Degrader Cycloclasticus sp.
10.1128/aem.01261-18 · 2018 · External reference
Biodegradation of phenanthrene by a halophilic bacterial consortium under aerobic conditions.
10.1007/s00284-008-9309-3 · 2009 · External reference
Characterization of pyrene degradation by halophilic Thalassospira sp. strain TSL5-1 isolated from the coastal soil of Yellow Sea.
10.1016/j.ibiod.2015.10.022 · 2016 · External reference
Functional and genomic insights into BHET-degrading Stenotrophomonas sp. isolated from the marine plastisphere.
10.3389/fmicb.2025.1680692 · 2025 · External reference