Research graph
References from Comparative pangenomics of the Corynebacterium kroppenstedtii complex reveals species structure and accessory genome diversity. Local targets link to admitted publications; unresolved targets remain external evidence.
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the comprehensive antibiotic resistance database
10.1093/nar/gkac920 · 2023 · External reference
A new method for non-parametric multivariate analysis of variance
10.1046/j.1442-9993.2001.01070.x · 2001 · External reference
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
10.4056/sigs.531120 · 2010 · External reference
In silico genomic analysis of resistome, virulome, and mobilome of β-lactamase-producing Klebsiella pneumoniae
10.1038/s41598-026-56520-7 · 2026 · External reference
BLAST: a more efficient report with usability improvements
10.1093/nar/gkt282 · 2013 · External reference
The ecology and evolution of Pangenomes
10.1016/j.cub.2019.08.012 · 2019 · External reference
PGAP2: a comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks
10.1038/s41467-025-64846-5 · 2025 · External reference
Fast and sensitive protein alignment using DIAMOND
10.1038/nmeth.3176 · 2015 · External reference
Identification of mobile genetic elements with geNomad
10.1038/s41587-023-01953-y · 2023 · External reference
eggNOG-mapper v2: functional annotation, Orthology assignments, and domain prediction at the metagenomic scale
10.1093/molbev/msab293 · 2021 · External reference
Corynebacterium kroppenstedtii sp. nov., a novel corynebacterium that does not contain mycolic acids
10.1099/00207713-48-4-1449 · 1998 · External reference
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
10.1093/nar/gku1196 · 2015 · External reference
Penicillin binding protein substitutions Cooccur with fluoroquinolone resistance in epidemic lineages of multidrug-resistant Clostridioides difficile
10.1128/mbio.00243-23 · 2023 · External reference
Antimicrobial treatment options for granulomatous mastitis caused by Corynebacterium species
10.1128/jcm.00760-15 · 2015 · External reference
MultiQC: summarize analysis results for multiple tools and samples in a single report
10.1093/bioinformatics/btw354 · 2016 · External reference
Characterization and antimicrobial susceptibility of one antibiotic-sensitive and one multidrug-resistant Corynebacterium kroppenstedtii strain isolated from patients with granulomatous mastitis
10.1016/j.nmni.2016.09.006 · 2016 · External reference
Propionibacterium acnes strain populations in the human skin microbiome associated with acne
10.1038/jid.2013.21 · 2013 · External reference
FastAAI: efficient estimation of genome average amino acid identity and phylum-level relationships using tetramers of universal proteins
10.1093/nar/gkaf348 · 2025 · External reference
QUAST: quality assessment tool for genome assemblies
10.1093/bioinformatics/btt086 · 2013 · External reference
Population genomics and antimicrobial resistance in Corynebacterium diphtheriae
10.1186/s13073-020-00805-7 · 2020 · External reference
Preliminary comparative genomics analysis among Corynebacterium kroppenstedtii complex necessitates a reassessment of precise species associated with mastitis
10.1093/jambio/lxad314 · 2024 · External reference
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
10.1038/s41467-018-07641-9 · 2018 · External reference
Pan-genomic analysis of Corynebacterium amycolatum gives insights into molecular mechanisms underpinning the transition to a pathogenic phenotype
10.3389/fmicb.2022.1011578 · 2022 · External reference
Genomic islands: tools of bacterial horizontal gene transfer and evolution
10.1111/j.1574-6976.2008.00136.x · 2009 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
10.1093/nar/gkac163 · 2022 · External reference
Current status of pan-genome analysis for pathogenic bacteria
10.1016/j.copbio.2019.12.001 · 2020 · External reference
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
10.1006/jmbi.2000.4315 · 2001 · External reference
Clinical characteristics and therapeutic strategy of granulomatous mastitis accompanied by Corynebacterium kroppenstedtii: a retrospective cohort study
10.1186/s12905-023-02509-7 · 2023 · External reference
Population genetic analysis of clinical Mycobacterium abscessus complex strains in China
10.3389/fcimb.2024.1496896 · 2025 · External reference
Clinical review and drug sensitivity test of Corynebacterium kroppenstedtii complex isolates in non-lactating patients with severe mastitis
10.3389/fmicb.2024.1501204 · 2024 · External reference
Corynebacterium parakroppenstedtii secretes a novel glycolipid to promote the development of granulomatous lobular mastitis
10.1038/s41392-024-01984-0 · 2024 · External reference
Classification of 27 Corynebacterium kroppenstedtii-like isolates associated with mastitis in China and descriptions of C. Parakroppenstedtii sp. nov. and C. Pseudokroppenstedtii sp. nov
10.1128/spectrum.01372-21 · 2022 · External reference
Cutibacterium acnes as an opportunistic pathogen: an update of its virulence-associated factors
10.3390/microorganisms9020303 · 2021 · External reference
Why prokaryotes have pangenomes
10.1038/nmicrobiol.2017.40 · 2017 · External reference
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
10.1093/molbev/msaa015 · 2020 · External reference
Corynebacterium species isolated from patients with mastitis
10.1086/344463 · 2002 · External reference
The Pan-genomic analysis of Corynebacterium striatum revealed its genetic characteristics as an emerging multidrug-resistant pathogen
10.1177/11769343231191481 · 2023 · External reference
MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies
10.1099/mgen.0.000206 · 2018 · External reference
The bacterial pangenome as a new tool for analysing pathogenic bacteria
10.1016/j.nmni.2015.06.005 · 2015 · External reference
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
10.1186/1471-2164-13-141 · 2012 · External reference
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification
10.1099/mgen.0.000685 · 2021 · External reference
Mobility of plasmids
10.1128/mmbr.00020-10 · 2010 · External reference
The Pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the Biovar ovis and equi strains
10.1371/journal.pone.0053818 · 2013 · External reference
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
10.1038/nbt.3988 · 2017 · External reference
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids
10.1016/j.jbiotec.2008.03.004 · 2008 · External reference
SignalP 6.0 predicts all five types of signal peptides using protein language models
10.1038/s41587-021-01156-3 · 2022 · External reference
Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia
10.1128/jb.00183-12 · 2012 · External reference
Arabinosyltransferase C mediates multiple drugs intrinsic resistance by altering cell envelope permeability in Mycobacterium abscessus
10.1128/spectrum.02763-21 · 2022 · External reference
Mobile genetic element flexibility as an underlying principle to bacterial evolution
10.1146/annurev-micro-032521-022006 · 2023 · External reference
ISEScan: automated identification of insertion sequence elements in prokaryotic genomes
10.1093/bioinformatics/btx433 · 2017 · External reference
Multi-omics signatures reveal genomic and functional heterogeneity of Cutibacterium acnes in normal and diseased skin
10.1016/j.chom.2024.06.002 · 2024 · External reference
Antibiotic resistance and resistance mechanism of Corynebacterium kroppenstedtii isolated from patients with mastadenitis
10.1007/s10096-023-04558-0 · 2023 · External reference
