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References from Multi-omics profiling identifies intestinal microbial shifts and tissue-specific immunometabolic changes associated with experimental Nocardia seriolae challenge in hybrid sturgeon (Acipenser baerii♀ × Acipenser schrenckii♂). Local targets link to admitted publications; unresolved targets remain external evidence.
The acute phase response and innate immunity of fish
10.1016/s0145-305x(01)00033-7 · 2001 · External reference
A cross-platform toolkit for mass spectrometry and proteomics
10.1038/nbt.2377 · 2012 · External reference
Transcriptome analysis of immune-related gene expression in hybrid snakehead (Channa maculata♀ × Channa argus♂) after challenge with Nocardia seriolae
10.1016/j.fsi.2018.07.039 · 2018 · External reference
Comprehensive transcriptomic, proteomic, and intestinal microbiota analyses of largemouth bass (Micropterus salmoides) intestines reveal new insights into immune responses to Aeromonas hydrophila infection
10.1016/j.fsi.2024.110057 · 2025 · External reference
Fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
A different transcriptional landscape sheds light on Russian sturgeon (Acipenser gueldenstaedtii) mechanisms to cope with bacterial infection and chronic heat stress
10.1016/j.fsi.2022.08.022 · 2022 · External reference
Integrated analysis of transcriptome and metabolome reveals the regulatory mechanism of largemouth bass (Micropterus salmoides) in response to Nocardia seriolae infection
10.1016/j.fsi.2023.109322 · 2024 · External reference
UPARSE: highly accurate OTU sequences from microbial amplicon reads
10.1038/nmeth.2604 · 2013 · External reference
Enteritis in hybrid sturgeon (Acipenser schrenckii♂ × Acipenser baeri♀) caused by intestinal microbiota disorder
10.1016/j.aqrep.2020.100456 · 2020 · External reference
Transcriptome analysis of Aeromonas hydrophila infected hybrid sturgeon (Huso dauricus×Acipenser schrenckii)
10.1038/s41598-018-36376-2 · 2018 · External reference
Metabolite features of serum and intestinal microbiota response of largemouth bass (Micropterus salmoides) after Aeromonas hydrophila challenge
10.1016/j.cbpc.2022.109496 · 2023 · External reference
Nocardia seriolae: a serious threat to the largemouth bass Micropterus salmoides industry in Southwest China
10.3354/dao03517 · 2020 · External reference
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
10.1186/1471-2105-12-323 · 2011 · External reference
Transcriptome profiles of Amur sturgeon spleen in response to Yersinia ruckeri infection
10.1016/j.fsi.2017.09.033 · 2017 · External reference
A review on the pathogenic bacterium Nocardia seriolae: aetiology, pathogenesis, diagnosis and vaccine development
10.1111/raq.12691 · 2023 · External reference
Isolation, identification, and pathogenic characteristics of Nocardia seriolae in largemouth bass Micropterus salmoides
10.3354/dao03659 · 2022 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Unresolved reference
2018 · External reference
Bacillus cereus alters bile acid composition and alleviates high-carbohydrate diet-induced hepatic lipid accumulation in Nile Tilapia (Oreochromis niloticus)
10.1021/acs.jafc.2c07945 · 2023 · External reference
Pathogenicity, diagnosis, prevention strategies and immune response of bacterium Nocardia seriolae: a critical review
10.1111/are.15988 · 2022 · External reference
Natural infection of hybrid sturgeon (Acipenser baerii♀× Acipenser schrenckii♂) with Nocardia seriolae and white sturgeon iridovirus: pathological and transcriptomic analyses
10.3389/fimmu.2024.1488159 · 2024 · External reference
Transcriptome, intestinal microbiome and histomorphology profiling of differences in the response of Chinese sea bass (Lateolabrax maculatus) to Aeromonas hydrophila infection
10.3389/fmicb.2023.1103412 · 2023 · External reference
Gut microbiota dysbiosis drives lethal bacterial enteritis in sturgeons: insights from ex vivo cultivation and metagenomic investigations
10.1111/jfd.70218 · 2026 · External reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · 2013 · External reference
XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
10.1021/ac051437y · 2006 · External reference
A transcriptome analysis focusing on inflammation-related genes of grass carp intestines following infection with Aeromonas hydrophila
10.1038/srep40777 · 2017 · External reference
Arginine-mediated liver immune regulation and antioxidant defense in largemouth bass (Micropterus salmoides): multi-omics insights into metabolic remodeling during Nocardia seriolae infection
10.3390/antiox14060681 · 2025 · External reference
Analysis of the human adult urinary metabolome variations with age, body mass index, and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses
10.1021/acs.jproteome.5b00354 · 2015 · External reference
Intestinal crosstalk between bile acids and microbiota and its impact on host metabolism
10.1016/j.cmet.2016.05.005 · 2016 · External reference
Exogenous bile acids regulate energy metabolism and improve the health condition of farmed fish
10.1016/j.aquaculture.2022.738852 · 2023 · External reference
The role of intestinal microbiota in regulating the metabolism of bile acids is conserved across vertebrates
10.3389/fmicb.2022.824611 · 2022 · External reference
Pathogenic infection and immune-related gene expression of Chinese sturgeon (Acipenser sinensis) challenged by Citrobacter freundii
10.1016/j.dci.2020.103872 · 2021 · External reference
Serine metabolism tunes immune responses to promote Oreochromis niloticus survival upon Edwardsiella tarda infection
10.1128/msystems.00426-21 · 2021 · External reference
Gut microbiota metagenomics in aquaculture: factors influencing gut microbiome and its physiological role in fish
10.1111/raq.12416 · 2020 · External reference
Effects of Aeromonas hydrophila infection on the intestinal microbiota, transcriptome, and metabolomic of common carp (Cyprinus carpio)
10.1016/j.fsi.2023.108876 · 2023 · External reference
Staphylococcus sciuri causes disease and pathological changes in hybrid sturgeon Acipenser baerii × Acipenser schrencki
10.3389/fcimb.2022.1029692 · 2022 · External reference
The interactions between the host immunity and intestinal microorganisms in fish
10.1007/s00253-023-12934-1 · 2024 · External reference
Intestinal microbial profiling and immune responses of hybrid snakehead (Channa maculata♀ × Channa argus♂) challenged with Nocardia seriolae strain
10.1016/j.aqrep.2024.102030 · 2024 · External reference
The interactions between the host immunity and intestinal microorganisms in fish
10.1007/s00253-023-12934-1 · ExternalCitation · doi-reference
Enteritis in hybrid sturgeon (Acipenser schrenckii♂ × Acipenser baeri♀) caused by intestinal microbiota disorder
10.1016/j.aqrep.2020.100456 · ExternalCitation · doi-reference
Intestinal microbial profiling and immune responses of hybrid snakehead (Channa maculata♀ × Channa argus♂) challenged with Nocardia seriolae strain
10.1016/j.aqrep.2024.102030 · ExternalCitation · doi-reference
Exogenous bile acids regulate energy metabolism and improve the health condition of farmed fish
10.1016/j.aquaculture.2022.738852 · ExternalCitation · doi-reference
Metabolite features of serum and intestinal microbiota response of largemouth bass (Micropterus salmoides) after Aeromonas hydrophila challenge
10.1016/j.cbpc.2022.109496 · ExternalCitation · doi-reference
Intestinal crosstalk between bile acids and microbiota and its impact on host metabolism
10.1016/j.cmet.2016.05.005 · ExternalCitation · doi-reference
Pathogenic infection and immune-related gene expression of Chinese sturgeon (Acipenser sinensis) challenged by Citrobacter freundii
10.1016/j.dci.2020.103872 · ExternalCitation · doi-reference
Transcriptome profiles of Amur sturgeon spleen in response to Yersinia ruckeri infection
10.1016/j.fsi.2017.09.033 · ExternalCitation · doi-reference
Transcriptome analysis of immune-related gene expression in hybrid snakehead (Channa maculata♀ × Channa argus♂) after challenge with Nocardia seriolae
10.1016/j.fsi.2018.07.039 · ExternalCitation · doi-reference
A different transcriptional landscape sheds light on Russian sturgeon (Acipenser gueldenstaedtii) mechanisms to cope with bacterial infection and chronic heat stress
10.1016/j.fsi.2022.08.022 · ExternalCitation · doi-reference
Effects of Aeromonas hydrophila infection on the intestinal microbiota, transcriptome, and metabolomic of common carp (Cyprinus carpio)
10.1016/j.fsi.2023.108876 · ExternalCitation · doi-reference
Integrated analysis of transcriptome and metabolome reveals the regulatory mechanism of largemouth bass (Micropterus salmoides) in response to Nocardia seriolae infection
10.1016/j.fsi.2023.109322 · ExternalCitation · doi-reference
Comprehensive transcriptomic, proteomic, and intestinal microbiota analyses of largemouth bass (Micropterus salmoides) intestines reveal new insights into immune responses to Aeromonas hydrophila infection
10.1016/j.fsi.2024.110057 · ExternalCitation · doi-reference
The acute phase response and innate immunity of fish
10.1016/s0145-305x(01)00033-7 · ExternalCitation · doi-reference
XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
10.1021/ac051437y · ExternalCitation · doi-reference
Bacillus cereus alters bile acid composition and alleviates high-carbohydrate diet-induced hepatic lipid accumulation in Nile Tilapia (Oreochromis niloticus)
10.1021/acs.jafc.2c07945 · ExternalCitation · doi-reference
Analysis of the human adult urinary metabolome variations with age, body mass index, and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses
10.1021/acs.jproteome.5b00354 · ExternalCitation · doi-reference
A cross-platform toolkit for mass spectrometry and proteomics
10.1038/nbt.2377 · ExternalCitation · doi-reference
UPARSE: highly accurate OTU sequences from microbial amplicon reads
10.1038/nmeth.2604 · ExternalCitation · doi-reference
Transcriptome analysis of Aeromonas hydrophila infected hybrid sturgeon (Huso dauricus×Acipenser schrenckii)
10.1038/s41598-018-36376-2 · ExternalCitation · doi-reference
A transcriptome analysis focusing on inflammation-related genes of grass carp intestines following infection with Aeromonas hydrophila
10.1038/srep40777 · ExternalCitation · doi-reference
Fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · ExternalCitation · doi-reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · ExternalCitation · doi-reference
Pathogenicity, diagnosis, prevention strategies and immune response of bacterium Nocardia seriolae: a critical review
10.1111/are.15988 · ExternalCitation · doi-reference
Gut microbiota dysbiosis drives lethal bacterial enteritis in sturgeons: insights from ex vivo cultivation and metagenomic investigations
10.1111/jfd.70218 · ExternalCitation · doi-reference
Gut microbiota metagenomics in aquaculture: factors influencing gut microbiome and its physiological role in fish
10.1111/raq.12416 · ExternalCitation · doi-reference
A review on the pathogenic bacterium Nocardia seriolae: aetiology, pathogenesis, diagnosis and vaccine development
10.1111/raq.12691 · ExternalCitation · doi-reference
Serine metabolism tunes immune responses to promote Oreochromis niloticus survival upon Edwardsiella tarda infection
10.1128/msystems.00426-21 · ExternalCitation · doi-reference
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
10.1186/1471-2105-12-323 · ExternalCitation · doi-reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · ExternalCitation · doi-reference
Nocardia seriolae: a serious threat to the largemouth bass Micropterus salmoides industry in Southwest China
10.3354/dao03517 · ExternalCitation · doi-reference
Isolation, identification, and pathogenic characteristics of Nocardia seriolae in largemouth bass Micropterus salmoides
10.3354/dao03659 · ExternalCitation · doi-reference
Staphylococcus sciuri causes disease and pathological changes in hybrid sturgeon Acipenser baerii × Acipenser schrencki
10.3389/fcimb.2022.1029692 · ExternalCitation · doi-reference
Natural infection of hybrid sturgeon (Acipenser baerii♀× Acipenser schrenckii♂) with Nocardia seriolae and white sturgeon iridovirus: pathological and transcriptomic analyses
10.3389/fimmu.2024.1488159 · ExternalCitation · doi-reference
The role of intestinal microbiota in regulating the metabolism of bile acids is conserved across vertebrates
10.3389/fmicb.2022.824611 · ExternalCitation · doi-reference
Transcriptome, intestinal microbiome and histomorphology profiling of differences in the response of Chinese sea bass (Lateolabrax maculatus) to Aeromonas hydrophila infection
10.3389/fmicb.2023.1103412 · ExternalCitation · doi-reference
Arginine-mediated liver immune regulation and antioxidant defense in largemouth bass (Micropterus salmoides): multi-omics insights into metabolic remodeling during Nocardia seriolae infection
10.3390/antiox14060681 · ExternalCitation · doi-reference
