Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from Association of hybridization and genome doubling with codon usage landscapes in the subgenomes of bread wheat. Local targets link to admitted publications; unresolved targets remain external evidence.
Novel patterns of gene expression in polyploid plants
10.1016/j.tig.2005.07.009 · 2005 · External reference
Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat
10.1104/pp.112.205161 · 2013 · External reference
The genome of the green anole lizard and a comparative analysis with birds and mammals
10.1038/nature10390 · 2011 · External reference
Polyploidy and interspecific hybridization: partners for adaptation, speciation and evolution in plants
10.1093/aob/mcx079 · 2017 · External reference
Shifting the limits in wheat research and breeding using a fully annotated reference genome
10.1126/science.aar7191 · 2018 · External reference
Wild emmer genome architecture and diversity elucidate wheat evolution and domestication
10.1126/science.aan0032 · 2017 · External reference
Codon usage bias: causative factors, quantification methods and genome-wide patterns: with emphasis on insect genomes
10.1111/j.1469-185x.2012.00242.x · 2013 · External reference
Evolution of genomic base composition: from single cell microbes to multicellular animals
10.1016/j.csbj.2019.03.001 · 2019 · External reference
Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners
10.1186/gb-2010-11-12-r125 · 2010 · External reference
A collinearity-incorporating homology inference strategy for connecting emerging assemblies in the Triticeae tribe as a pilot practice in the plant pangenomic era
10.1016/j.molp.2020.09.019 · 2020 · External reference
Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids
10.1146/annurev.arplant.58.032806.103835 · 2007 · External reference
Evolutionary genetics of genome merger and doubling in plants
10.1146/annurev.genet.42.110807.091524 · 2008 · External reference
Biased gene conversion and GC-content evolution in the coding sequences of reptiles and vertebrates
10.1093/gbe/evu277 · 2014 · External reference
Codon usage bias in animals: disentangling the effects of natural selection, effective population size, and GC-biased gene conversion
10.1093/molbev/msy015 · 2018 · External reference
GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis
10.1016/j.tig.2014.05.002 · 2014 · External reference
Pervasive hybridizations in the history of wheat relatives
10.1126/sciadv.aav9188 · 2019 · External reference
Reciprocal allopolyploid grasses (Festuca × Lolium) display stable patterns of genome dominance
10.1111/tpj.15375 · 2021 · External reference
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
10.1038/nprot.2013.084 · 2013 · External reference
Extreme mutation bias and high AT content in Plasmodium falciparum
10.1093/nar/gkw1259 · 2016 · External reference
Selection on codon bias
10.1146/annurev.genet.42.110807.091442 · 2008 · External reference
CUBAP: an interactive web portal for analyzing codon usage biases across populations
10.1093/nar/gkaa863 · 2020 · External reference
Nucleosome positioning: bringing order to the eukaryotic genome
10.1016/j.tcb.2012.02.004 · 2012 · External reference
Genome fractionation and loss of heterozygosity in hybrids and polyploids: mechanisms, consequences for selection, and link to gene function
10.1093/molbev/msab249 · 2021 · External reference
Contrasting evolutionary dynamics between angiosperm and mammalian genomes
10.1016/j.tree.2009.04.010 · 2009 · External reference
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
10.1186/gb-2001-2-4-research0010 · 2001 · External reference
Genomic plasticity and the diversity of polyploid plants
10.1126/science.1153585 · 2008 · External reference
Characterizing the interplay between gene nucleotide composition bias and splicing
10.1186/s13059-019-1869-y · 2019 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
Asymmetric epigenetic modification and homoeolog expression bias in the establishment and evolution of allopolyploid Brassica napus
10.1111/nph.17621 · 2021 · External reference
Evolutionary determinants of genome-wide nucleotide composition
10.1038/s41559-017-0425-y · 2018 · External reference
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
10.1038/nature24486 · 2017 · External reference
Durum wheat genome highlights past domestication signatures and future improvement targets
10.1038/s41588-019-0381-3 · 2019 · External reference
Hybrid speciation
10.1038/nature05706 · 2007 · External reference
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
10.1126/science.1251788 · 2014 · External reference
Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species
10.1186/gb-2006-7-8-r75 · 2006 · External reference
The guanine and cytosine content of genomic DNA and bacterial evolution
10.1073/pnas.84.1.166 · 1987 · External reference
GC-biased gene conversion and selection affect GC content in the Oryza genus (rice)
10.1093/molbev/msr104 · 2011 · External reference
Elucidation of codon usage signatures across the domains of life
10.1093/molbev/msz124 · 2019 · External reference
Directional mutation pressure and transfer RNA in choice of the third nucleotide of synonymous two-codon sets
10.1073/pnas.85.4.1124 · 1988 · External reference
A general model of codon bias due to GC mutational bias
10.1371/journal.pone.0013431 · 2010 · External reference
Synonymous but not the same: the causes and consequences of codon bias
10.1038/nrg2899 · 2011 · External reference
Runaway GC evolution in gerbil genomes
10.1093/molbev/msaa072 · 2020 · External reference
The transcriptional and splicing changes caused by hybridization can be globally recovered by genome doubling during allopolyploidization
10.1093/molbev/msab045 · 2021 · External reference
The effects of hybridization and genome doubling in plant evolution via allopolyploidy
10.1007/s11033-020-05597-y · 2020 · External reference
The transcriptional landscape of polyploid wheat
10.1126/science.aar6089 · 2018 · External reference
The map-based sequence of the rice genome
10.1038/nature03895 · 2005 · External reference
Chromatin organization marks exon-intron structure
10.1038/nsmb.1659 · 2009 · External reference
Patterns and evolution of nucleotide landscapes in seed plants
10.1105/tpc.111.093674 · 2012 · External reference
Patterns of ancestral animal codon usage bias revealed through holozoan protists
10.1093/molbev/msy157 · 2018 · External reference
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
10.1101/gr.222976.117 · 2018 · External reference
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
10.1534/genetics.105.047894 · 2006 · External reference
Comparative analysis of genomic and transcriptome sequences reveals divergent patterns of codon bias in wheat and its ancestor species
10.3389/fgene.2021.732432 · 2021 · External reference
Changes in alternative splicing in response to domestication and polyploidization in wheat
10.1104/pp.20.00773 · 2020 · External reference
Distinct nucleotide patterns among three subgenomes of bread wheat and their potential origins during domestication after allopolyploidization
10.1186/s12915-020-00917-x · 2020 · External reference
Triticum population sequencing provides insights into wheat adaptation
10.1038/s41588-020-00722-w · 2020 · External reference
