Research graph
References from Time-course transcriptome and WGCNA reveal tissue-specific genes in ‘White BK-1’ rye during early cold acclimation stage. Local targets link to admitted publications; unresolved targets remain external evidence.
The roots of plant frost hardiness and tolerance
10.1093/pcp/pcz196 · 2020 · External reference
Identification of hub genes regulating isoflavone accumulation in soybean seeds via GWAS and WGCNA approaches
10.3389/fpls.2023.1120498 · 2023 · External reference
Association mapping of autumn-seeded rye (Secale cereale L.) reveals genetic linkages between genes controlling winter hardiness and plant development
10.1038/s41598-022-09582-2 · 2022 · External reference
The relationships between plant developmental traits and winter field survival in rye (Secale cereale L.)
10.3390/plants10112455 · 2021 · External reference
The history of rye cultivation in Europe
10.1007/bf00191554 · 1992 · External reference
Comparative expression of Cbf genes in the Triticeae under different acclimation induction temperatures
10.1007/s00438-009-0451-9 · 2009 · External reference
TBtools-II: A "one for all, all for one" bioinformatics platform for biological big-data mining
10.1016/j.molp.2023.09.010 · 2023 · External reference
Fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Regulatory networks underlying plant responses and adaptation to cold stress
10.1146/annurev-genet-111523-102226 · 2024 · External reference
Genome-wide identification and expression analysis of late embryogenesis abundant protein-encoding genes in rye (Secale cereale L.)
10.1371/journal.pone.0249757 · 2021 · External reference
Wheat growth model capturing growth-defense trade-off
10.3389/fpls.2026.1763868 · 2026 · External reference
Exploring new alleles for frost tolerance in winter rye
10.1007/s00122-017-2948-7 · 2017 · External reference
The GI-CDF module of Arabidopsis affects freezing tolerance and growth as well as flowering
10.1111/tpj.12759 · 2015 · External reference
Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response
10.1016/j.devcel.2009.06.015 · 2009 · External reference
Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants
10.1111/j.1399-3054.2012.01635.x · 2013 · External reference
Quantitative expression analysis of selected COR genes reveals their differential expression in leaf and crown tissues of wheat (Triticum aestivum L.) during an extended low temperature acclimation regimen
10.1093/jxb/ern112 · 2008 · External reference
An in vivo system involving co-expression of cyanobacterial flavodoxin and ferredoxin-NADP(+) reductase confers increased tolerance to oxidative stress in plants
10.1016/j.fob.2011.10.004 · 2011 · External reference
The interrelationship of growth and frost tolerance in winter rye
10.1111/j.1399-3054.1993.tb01739.x · 1993 · External reference
A novel cold-regulated protein isolated from Saussurea involucrata confers cold and drought tolerance in transgenic tobacco (Nicotiana tabacum)
10.1016/j.plantsci.2019.110246 · 2019 · External reference
Improving yield and yield stability in winter rye by hybrid breeding
10.3390/plants11192666 · 2022 · External reference
Advancing wheat breeding using rye: a key contribution to wheat breeding history
10.1016/j.tibtech.2025.03.008 · 2025 · External reference
A global survey of gene regulation during cold acclimation in Arabidopsis thaliana
10.1371/journal.pgen.0010026 · 2005 · External reference
Arabidopsis cold-regulated plasma membrane protein Cor413pm1 is a regulator of ABA response
10.1016/j.bbrc.2021.05.032 · 2021 · External reference
ICE-CBF-COR signaling cascade and its regulation in plants responding to cold stress
10.3390/ijms23031549 · 2022 · External reference
Changes in gene expression during dehardening of cold-hardened winter rye (Secale cereale L.) leaves and potential role of a peptide methionine sulfoxide reductase in cold-acclimation
10.1007/s00425-004-1410-7 · 2005 · External reference
Cold stress and acclimation - what is important for metabolic adjustment
10.1111/j.1438-8677.2009.00299.x · 2010 · External reference
Overexpressing IbCBF3 increases low temperature and drought stress tolerance in transgenic sweetpotato
10.1016/j.plaphy.2017.06.002 · 2017 · External reference
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
10.1093/nar/gkw982 · 2017 · External reference
Identification of novel C-repeat binding factor (CBF) genes in rye (Secale cereale L.) and expression studies
10.1016/j.gene.2018.10.055 · 2019 · External reference
Root plasticity under abiotic stress
10.1093/plphys/kiab392 · 2021 · External reference
Molecular mechanisms of CBL-CIPK signaling pathway in plant abiotic stress tolerance and hormone crosstalk
10.3390/ijms25095043 · 2024 · External reference
Targeted expression of redesigned and codon optimised synthetic gene leads to recrystallisation inhibition and reduced electrolyte leakage in spring wheat at sub-zero temperatures
10.1007/s00299-006-0191-9 · 2006 · External reference
Transcriptional regulatory network of plant cold-stress responses
10.1016/j.tplants.2022.01.008 · 2022 · External reference
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
10.1111/j.1365-313x.2007.03052.x · 2007 · External reference
HISAT: a fast spliced aligner with low memory requirements
10.1038/nmeth.3317 · 2015 · External reference
Nuclear import of the parsley bZIP transcription factor CPRF2 is regulated by phytochrome photoreceptors
10.1083/jcb.144.2.201 · 1999 · External reference
Goatools: A python library for gene ontology analyses
10.1038/s41598-018-28948-z · 2018 · External reference
How to survive mild winters: Cold acclimation, deacclimation, and reacclimation in winter wheat and barley
10.1016/j.plaphy.2025.109541 · 2025 · External reference
Expression of dehydrins in wheat and barley under different temperatures
10.1016/j.plantsci.2010.07.003 · 2011 · External reference
Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
10.1104/pp.008532 · 2002 · External reference
An appropriate physiological control for environmental temperature studies: comparative growth kinetics of winter rye
10.1139/b84-146 · 1984 · External reference
Dynamic changes in the transcriptome of tropical region-originated king grasses in response to cold stress
10.3389/fpls.2025.1511466 · 2025 · External reference
WGCNA: an R package for weighted correlation network analysis
10.1186/1471-2105-9-559 · 2008 · External reference
Growth-regulating factors interact with DELLAs and regulate growth in cold stress
10.1105/tpc.19.00784 · 2020 · External reference
Association analysis of frost tolerance in rye using candidate genes and phenotypic data from controlled, semi-controlled, and field phenotyping platforms
10.1186/1471-2229-11-146 · 2011 · External reference
BZR1 positively regulates freezing tolerance via CBF-dependent and CBF-independent pathways in Arabidopsis
10.1016/j.molp.2017.01.004 · 2017 · External reference
Integrative physiological and transcriptomic analysis reveals metabolic adaptation and cold-tolerance marker development in winter rye under low-temperature stress
10.3390/plants14111588 · 2025 · External reference
Cold acclimation by the CBF-COR pathway in a changing climate: Lessons from Arabidopsis thaliana
10.1007/s00299-019-02376-3 · 2019 · External reference
Genetic mechanisms of cold signaling in wheat (Triticum aestivum L.)
10.3390/life12050700 · 2022 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Light quantity impacts early response to cold and cold acclimation in young leaves of Arabidopsis
10.1111/pce.15481 · 2025 · External reference
Cold, salinity and drought stresses: an overview
10.1016/j.abb.2005.10.018 · 2005 · External reference
Transcriptional factors regulate plant stress responses through mediating secondary metabolism
10.3390/genes11040346 · 2020 · External reference
Characterizing reduced height wheat mutants for traits affecting abiotic stress and photosynthesis during seedling growth
10.1111/ppl.13321 · 2021 · External reference
Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network
10.1111/tpj.12796 · 2015 · External reference
tae-miR399-UBC24 module enhances freezing tolerance in winter wheat via a CBF signaling pathway
10.1021/acs.jafc.1c04316 · 2021 · External reference
Differential phosphatidic acid metabolism in barley leaves and roots induced by chilling temperature
10.1016/j.plaphy.2018.08.038 · 2018 · External reference
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
10.1038/nbt.3122 · 2015 · External reference
RFLP mapping of genes affecting plant height and growth habit in rye
10.1007/bf00215046 · 1993 · External reference
Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential
10.1038/s41588-021-00807-0 · 2021 · External reference
Overwintering of herbaceous plants in a changing climate. Still more questions than answers
10.1016/j.plantsci.2014.05.009 · 2014 · External reference
Exogenous methyl Jasmonate improves cold tolerance with parallel induction of two cold-regulated (COR) genes expression in Triticum aestivum L
10.3390/plants10071421 · 2021 · External reference
Mechanisms of cold-induced immunity in plants
10.1111/ppl.13846 · 2023 · External reference
Temperature-induced dynamics of plant carbohydrate metabolism
10.1111/ppl.13602 · 2022 · External reference
Cytoscape: a software environment for integrated models of biomolecular interaction networks
10.1101/gr.1239303 · 2003 · External reference
Cold signal transduction and its interplay with phytohormones during cold acclimation
10.1093/pcp/pcu115 · 2015 · External reference
Molecular regulation of CBF signaling in cold acclimation
10.1016/j.tplants.2018.04.002 · 2018 · External reference
Transgenic barley lines prove the involvement of TaCBF14 and TaCBF15 in the cold acclimation process and in frost tolerance
10.1093/jxb/ert050 · 2013 · External reference
Proteomic analysis of the function of a novel cold-regulated multispanning transmembrane protein COR413-PM1 in Arabidopsis
10.3390/ijms19092572 · 2018 · External reference
Population genomic analysis reveals domestication of cultivated rye from weedy rye
10.1016/j.molp.2021.12.015 · 2022 · External reference
Exploring the impact of blue light on cold acclimation mechanisms in wheat: A comparative analysis of leaf and root responses
10.1016/j.plaphy.2025.110078 · 2025 · External reference
Effect of methyl Jasmonate on the expression of Wcs genes and the activity of antioxidant enzymes at wheat cold adaptation
10.1134/s1607672918050022 · 2018 · External reference
Plant cold acclimation: Freezing tolerance genes and regulatory mechanisms
10.1146/annurev.arplant.50.1.571 · 1999 · External reference
Molecular basis of plant cold acclimation: insights gained from studying the CBF cold response pathway
10.1104/pp.110.161794 · 2010 · External reference
The effect of cold acclimation, deacclimation and reacclimation on metabolite profiles and freezing tolerance in winter wheat
10.3389/fpls.2022.959118 · 2022 · External reference
Plant hormone-mediated regulation of stress responses
10.1186/s12870-016-0771-y · 2016 · External reference
COR27 and COR28 encode nighttime repressors integrating Arabidopsis circadian clock and cold response
10.1111/jipb.12512 · 2017 · External reference
MbWRKY50 confers cold and drought tolerance through upregulating antioxidant capacity associated with ROS scavenging
10.1016/j.jplph.2025.154526 · 2025 · External reference
Genome-wide identification and expression analysis of Trehalose 6-phosphate (Tre6P) synthase (TPS) and Tre6P phosphatase (TPP) genes under cold stress in winter rye (Secale cereals L.)
10.1186/s12864-025-12514-9 · 2026 · External reference
Cold stress triggers freezing tolerance in wheat (Triticum aestivum L.) via hormone regulation and transcription of related genes
10.1111/plb.13489 · 2023 · External reference
Population transcriptome and phenotype analyses reveal that Rht-D1b contributed a larger seedling root to modern bread wheat
10.1093/plcell/koaf267 · 2025 · External reference
Phosphorylation of the parsley bZIP transcription factor CPRF2 is regulated by light
10.1074/jbc.274.41.29476 · 1999 · External reference
Dissecting pleiotropic functions of the wheat Green Revolution gene Rht-B1b in plant morphogenesis and yield formation
10.1242/dev.201601 · 2023 · External reference
Biotechnological implications from abscisic acid (ABA) roles in cold stress and leaf senescence as an important signal for improving plant sustainable survival under abiotic-stressed conditions
10.3109/07388551.2010.487186 · 2010 · External reference
Contrasting cold tolerance and underlying physiological mechanisms in two rye varieties during seed germination and seedling stages
10.16742/j.zgcdxb.20230319 · 2024 · External reference
Physiological response mechanism of rye to low temperature during cold hardening and rejuvenation period
10.7668/hbnxb.20194655 · 2024 · External reference
ABA enhanced cold tolerance of wheat 'dn1' via increasing ROS scavenging system
10.1080/15592324.2020.1780403 · 2020 · External reference
Ethylene induces antifreeze activity in winter rye leaves
10.1104/pp.126.3.1232 · 2001 · External reference
JA-induced TaMPK6 enhanced the freeze tolerance of Arabidopsis thaliana through regulation of ICE-CBF-COR module and antioxidant enzyme system
10.1016/j.plantsci.2023.111621 · 2023 · External reference
Calcium signaling-mediated plant response to cold stress
10.3390/ijms19123896 · 2018 · External reference
Temperature regulation in plants: From molecular mechanisms to climate-resilient crop improvement
10.1111/jipb.70260 · 2026 · External reference
Overexpression of a common wheat gene TaSnRK2.8 enhances tolerance to drought, salt and low temperature in Arabidopsis
10.1371/journal.pone.0016041 · 2010 · External reference
A C2H2-type zinc finger protein ZAT12 of Poncirus trifoliata acts downstream of CBF1 to regulate cold tolerance
10.1111/tpj.16562 · 2024 · External reference
PsCor413pm2, a plasma membrane-localized, cold-regulated protein from Phlox subulata, confers low temperature tolerance in Arabidopsis
10.3390/ijms19092579 · 2018 · External reference
Differences in physiological responses of two tomato genotypes to combined waterlogging and cadmium stresses
10.3390/antiox12061205 · 2023 · External reference
COLD-REGULATED GENE27 integrates signals from light and the circadian clock to promote hypocotyl growth in Arabidopsis
10.1105/tpc.20.00192 · 2020 · External reference
