Research graph
References from Root-TransUNet enables high-throughput phenotyping of Arabidopsis thaliana roots as a parameter in Heterodera schachtii parasitism. Local targets link to admitted publications; unresolved targets remain external evidence.
A novel focal Tversky loss function with improved attention U-net for lesion segmentation
2019 · External reference
A deep learning framework to discern and count microscopic nematode eggs
10.1038/s41598-018-27272-w · 2018 · External reference
Fitting linear mixed-effects models Usinglme4
10.18637/jss.v067.i01 · 2015 · External reference
A screen for Arabidopsis thaliana mutants with altered susceptibility to Heterodera schachtii
2000 · External reference
Large-scale machine learning with stochastic gradient descent
2010 · External reference
Scale-invariant feature transform (SIFT)
2022 · External reference
Swin-unet: Unet-like pure transformer for medical image segmentation
2023 · External reference
TransUNet: Transformers make strong encoders for medical image segmentation
2021 · External reference
Instance segmentation of nematode cysts in microscopic images of soil samples
10.1109/embc.2019.8856567 · 2019 · External reference
Encoder-decoder with atrous separable convolution for semantic image segmentation
10.1007/978-3-030-01234-2_49 · 2018 · External reference
Napari: A python multi-dimensional image viewer platform for the research community
10.1017/s1431927622006328 · 2022 · External reference
Measures of the amount of ecologic association between species
10.2307/1932409 · 1945 · External reference
Unresolved reference
External reference
Plant-parasitic nematode management via biofumigation using brassica and non-brassica plants: Current status and future prospects
10.1016/j.cpb.2019.02.001 · 2019 · External reference
Random sample consensus: A paradigm for model fitting with applications to image analysis and automated cartography
1987 · External reference
Array programming with NumPy
10.1038/s41586-020-2649-2 · 2020 · External reference
Unresolved reference
External reference
Best linear unbiased estimation and prediction under a selection model
10.2307/2529430 · 1975 · External reference
Females and males of root-parasitic cyst nematodes induce different symplasmic connections between their syncytial feeding cells and the phloem in Arabidopsis thaliana
10.1016/j.plaphy.2006.06.006 · 2006 · External reference
Strip pooling: Rethinking spatial pooling for scene parsing
2020 · External reference
A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana
10.1371/journal.pgen.1000551 · 2009 · External reference
A low-cost and open-source solution to automate imaging and analysis of cyst nematode infection assays for Arabidopsis thaliana
10.1186/s13007-022-00963-2 · 2022 · External reference
Root phenotyping: from component trait in the lab to breeding
10.1093/jxb/erv239 · 2015 · External reference
LmerTest package: Tests in linear mixed effects models
10.18637/jss.v082.i13 · 2017 · External reference
The global k-means clustering algorithm
10.1016/s0031-3203(02)00060-2 · 2003 · External reference
Rubén Daniel Ledesma. Cliff’s Delta Calculator: non-parametric effect size program two groups observations
10.11144/javeriana.upsy10-2.cdcp · 2011 · External reference
Data Structures for Statistical Computing in Python
2010 · External reference
The Mann-Whitney U: A test for assessing whether two independent samples come from the same distribution
10.20982/tqmp.04.1.p013 · 2008 · External reference
Fully-automated root image analysis (faRIA)
10.1038/s41598-021-95480-y · 2021 · External reference
An introduction to convolutional neural networks
10.48550/arxiv.1511.08458 · 2015 · External reference
Root traits and phenotyping strategies for plant improvement
10.3390/plants4020334 · 2015 · External reference
Unresolved reference
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Unresolved reference
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Circular arc detection based on Hough transform
10.1016/0167-8655(95)80007-g · 1995 · External reference
piecewise-regression (aka segmented regression) in Python
10.21105/joss.03859 · 2021 · External reference
Unresolved reference
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Unresolved reference
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LabelMe: A database and web-based tool for image annotation
10.1007/s11263-007-0090-8 · 2008 · External reference
Counting nematodes made easy: leveraging AI-powered automation for enhanced efficiency and precision
10.3389/fpls.2024.1349209 · 2024 · External reference
Iterative image segmentation of plant roots for high-throughput phenotyping
10.1038/s41598-022-19754-9 · 2022 · External reference
An analysis of variance test for normality (complete samples)
10.1093/biomet/52.3-4.591 · 1965 · External reference
ClDice - a novel topology-preserving loss function for tubular structure segmentation
2021 · External reference
Arabidopsis thaliana as a new model host for plant‐parasitic nematodes
10.1111/j.1365-313x.1991.00245.x · 1991 · External reference
Segmentation of roots in soil with U-Net
10.1186/s13007-020-0563-0 · 2020 · External reference
BloomSight: An ultra-high-frequency phenotyping framework for diurnal flowering dynamics in japonica and indica rice to enable genetic dissection and hybrid-breeding applications
10.1016/j.plaphe.2026.100215 · 2026 · External reference
AirMeasurer: open-source software to quantify static and dynamic traits derived from multiseason aerial phenotyping to empower genetic mapping studies in rice
10.1111/nph.18314 · 2022 · External reference
SciPy 1.0: fundamental algorithms for scientific computing in Python
10.1038/s41592-019-0686-2 · 2020 · External reference
From root to shoot: quantifying nematode tolerance in Arabidopsis thaliana by high-throughput phenotyping of plant development
10.1093/jxb/erad266 · 2023 · External reference
Applications of multi-omics technologies for crop improvement
10.3389/fpls.2021.563953 · 2021 · External reference
RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures
10.1093/gigascience/giz123 · 2019 · External reference
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