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References from Genetic diversity and population structure of Coffea arabica in Saudi Arabia revealed by whole-genome resequencing. Local targets link to admitted publications; unresolved targets remain external evidence.
Effectiveness of single nucleotide polymorphism markers in genotyping germplasm collections of Coffea canephora using KASP assay
10.3389/fpls.2020.612593 · 2021 · External reference
Fast model-based estimation of ancestry in unrelated individuals
10.1101/gr.094052.109 · 2009 · External reference
Assessment of genetic diversity of local coffee populations in southwestern Saudi Arabia using SRAP markers
10.3390/agronomy13020302 · 2023 · External reference
First occurrence of coffee leaf rust caused by Hemileia vastatrix on coffee in Saudi Arabia
10.3390/microbiolres15010011 · 2024 · External reference
Robust biodiversity assessment and DNA fingerprinting of Saudi and Exotic sesame germplasm using whole genome resequencing
10.1007/s10722-025-02718-z · 2026 · External reference
Genetic diversity of cultivated Gayo Arabica Coffee (Coffea arabica L.) based on morphological and microsatellite markers
10.1186/s12870-025-06768-4 · 2025 · External reference
Genetic diversity of yellow and red berries Arabica coffee populations grown in a mix populations in Garut, West Java, Indonesia, based on SSR markers
10.29244/jtcs.11.03.207-216 · 2024 · External reference
Second-generation PLINK: rising to the challenge of larger and richer datasets
10.1186/s13742-015-0047-8 · 2015 · External reference
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
10.4161/fly.19695 · 2012 · External reference
The variant call format and VCFtools
10.1093/bioinformatics/btr330 · 2011 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
Genomic data define species delimitation in Liberica coffee with implications for crop development and conservation
10.1038/s41477-025-02073-y · 2025 · External reference
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
1987 · External reference
Unresolved reference
2024 · External reference
Population structure and genetic diversity of a coffee germplasm collection in China revealed by RAD-seq
10.3389/fpls.2025.1629553 · 2025 · External reference
Assessment of genetic diversity and phylogenetic relationship of local coffee populations in southwestern Saudi Arabia using DNA barcoding
10.20944/preprints202306.1304.v1 · 2023 · External reference
Effect of fertilization on yield and quality of Arabica coffee grown on mountain terraces in southwestern Saudi Arabia
10.1016/j.scienta.2023.112370 · 2023 · External reference
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
2013 · External reference
Exploring population structure with admixture models and principal component analysis
10.1007/978-1-0716-0199-0_4 · 2020 · External reference
Robust relationship inference in genome-wide association studies
10.1093/bioinformatics/btq559 · 2010 · External reference
Discrimination of green coffee (Coffea arabica and Coffea canephora) of different geographical origin based on antioxidant activity, high-throughput metabolomics, and DNA RFLP fingerprinting
10.3390/antiox12051135 · 2023 · External reference
Whole-genome resequencing of Coffea arabica L.(Rubiaceae) genotypes identify SNP and unravels distinct groups showing a strong geographical pattern
10.1186/s12870-022-03449-4 · 2022 · External reference
Genetic diversity and population structure analysis of Arabica coffee (Coffea arabica L.) germplasm collections in Burundi based on DARTseq
10.13189/ujar.2023.110206 · 2023 · External reference
Genetic diversity of Coffea arabica accessions using RAPD and DAMD molecular markers
10.1080/01140671.2025.2454606 · 2025 · External reference
Biodiversity and evaluation of genetic resources of some coffee trees grown in Al-Baha, Saudi Arabia
10.3390/cimb47030136 · 2025 · External reference
PLINK: a tool set for whole-genome association and population-based linkage analyses
10.1086/519795 · 2007 · External reference
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago
10.1038/s41598-021-87419-0 · 2021 · External reference
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
2023 · External reference
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
10.1038/s41588-024-01695-w · 2024 · External reference
A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm
10.1038/s41598-020-61216-7 · 2020 · External reference
Authentication of coffee by means of PCR-RFLP analysis and lab-on-a-chip capillary electrophoresis
10.1021/jf061164n · 2006 · External reference
Genome-wide SNP discovery using ddRADseq reveals candidate loci associated with salinity tolerance in rice
10.1080/23311932.2026.2683167 · 2026 · External reference
Genome association of carbohydrate metabolites provides new insights toward functional breeding in coffee
10.1002/tpg2.70239 · 2026 · External reference
Water relations and photo-protection mechanisms during drought stress in four coffee (Coffea arabica) cultivars from southwestern Saudi Arabia
10.1016/j.sajb.2018.04.022 · 2018 · External reference
Crop-to-wild gene flow in wild coffee species: the case of Coffea canephora in the Democratic Republic of the Congo
10.1093/aob/mcae034 · 2024 · External reference
Population genetic characteristics of the cultivated Coffea arabica with whole-genome resequencing
10.3390/horticulturae10111153 · 2024 · External reference
GWAS of grain color and tannin content in Chinese sorghum based on whole-genome sequencing
10.1007/s00122-023-04307-z · 2023 · External reference