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References from Pangenome-wide identification and analysis of the heat shock transcription factor gene family in tea plant (Camellia sinensis). Local targets link to admitted publications; unresolved targets remain external evidence.
Gephi: An open source software for exploring and manipulating networks
10.1609/icwsm.v3i1.13937 · 2009 · External reference
Bias in plant gene content following different sorts of duplication: Tandem, whole-genome, segmental, or by transposition
2009 · External reference
Fast and sensitive protein alignment using DIAMOND
10.1038/nmeth.3176 · 2015 · External reference
BLAST+: architecture and applications
10.1186/1471-2105-10-421 · 2009 · External reference
Gene mining and genomics-assisted breeding empowered by the pangenome of tea plant Camellia sinensis
10.1038/s41477-023-01565-z · 2023 · External reference
TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining
10.1016/j.molp.2023.09.010 · 2023 · External reference
Plants contain a novel multi-member class of heat shock factors without transcriptional activator potential
10.1023/a:1006448607740 · 2000 · External reference
Extensive error in the number of genes inferred from draft genome assemblies
10.1371/journal.pcbi.1003998 · 2014 · External reference
OrthoFinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
Dynamics of cis-regulatory sequences and transcriptional divergence of duplicated genes in soybean
10.1073/pnas.2303836120 · 2023 · External reference
The repressor and co-activator HsfB1 regulates the major heat stress transcription factors in tomato
10.1111/pce.13434 · 2019 · External reference
TPIA2: an updated tea plant information archive for Camellia genomics
10.1093/nar/gkad701 · 2024 · External reference
Arabidopsis HsfB1 and HsfB2b act as repressors of the expression of heat-inducible Hsfs but positively regulate the acquired thermotolerance
10.1104/pp.111.179036 · 2011 · External reference
Identification and functional characterization of the nonexpressor of pathogenesis-related genes 1 (NPR1) gene in the tea plant (Camellia sinensis)
10.3390/f14081578 · 2023 · External reference
Genome-wide identification, characterization, and expression profiling of the glutaredoxin gene family in tea plant (Camellia sinensis)
10.3390/f14081647 · 2023 · External reference
InterProScan 5: genome-scale protein function classification
10.1093/bioinformatics/btu031 · 2014 · External reference
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
10.1093/bib/bbx108 · 2019 · External reference
HsfB2b-mediated repression of PRR7 directs abiotic stress responses of the circadian clock
10.1073/pnas.1418483111 · 2014 · External reference
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
10.1093/nar/gkae268 · 2024 · External reference
Plant hormone-mediated regulation of heat tolerance in response to global climate change
10.3389/fpls.2020.627969 · 2021 · External reference
A gentle introduction to pangenomics
10.1093/bib/bbae588 · 2024 · External reference
IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era
10.1093/molbev/msaa015 · 2020 · External reference
The plant heat stress transcription factor (Hsf) family: Structure, function and evolution
10.1016/j.bbagrm.2011.10.002 · 2012 · External reference
Pangenome and pantranscriptome as the new reference for gene-family characterization: A case study of basic helix-loop-helix (bHLH) genes in barley
10.1016/j.xplc.2024.101190 · 2025 · External reference
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
10.1093/nar/gkr1293 · 2012 · External reference
Tea plant information archive: a comprehensive genomics and bioinformatics platform for tea plant
10.1111/pbi.13111 · 2019 · External reference
Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice
10.1007/s00299-013-1492-4 · 2013 · External reference
Gene co-expression network tools and databases for crop improvement
10.3390/plants11131625 · 2022 · External reference
Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance
10.1186/s12870-020-02462-9 · 2020 · External reference
