Research graph
References from The circulating metatranscriptome in acute myeloid leukemia patients: an RNA-seq reanalysis. Local targets link to admitted publications; unresolved targets remain external evidence.
Blood microbiota dysbiosis is associated with the onset of cardiovascular events in a large general population: the D.E.S.I.R. study
10.1371/journal.pone.0054461 · 2013 · External reference
The status of the human gene catalogue
10.1038/s41586-023-06490-x · 2023 · External reference
A pan-cancer analysis of the microbiome in metastatic cancer
10.1016/j.cell.2024.03.021 · 2024 · External reference
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
10.1186/s13059-018-1568-0 · 2018 · External reference
edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets
10.1093/nar/gkaf018 · 2025 · External reference
Recognizing the reagent microbiome
10.1038/s41564-018-0202-y · 2018 · External reference
Elevated levels of circulating DNA in cardiovascular disease patients: metagenomic profiling of microbiome in the circulation
10.1371/journal.pone.0105221 · 2014 · External reference
Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer
10.1038/s41586-022-05435-0 · 2022 · External reference
Major data analysis errors invalidate cancer microbiome findings
10.1128/mbio.01607-23 · 2023 · External reference
The landscape of microbial associations in human cancer
10.1126/scitranslmed.ads6166 · 2025 · External reference
Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients
10.1126/science.aan4236 · 2018 · External reference
Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes
10.1371/journal.pone.0006978 · 2009 · External reference
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
10.1038/s41586-022-05546-8 · 2023 · External reference
Fecal microbiota diversity disruption and clinical outcomes after auto-HCT: a multicenter observational study
10.1182/blood.2020006923 · 2021 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
The sequence alignment/map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
Systematic dissection of the metabolic-apoptotic interface in AML reveals heme biosynthesis to be a regulator of drug sensitivity
10.1016/j.cmet.2019.01.011 · 2019 · External reference
Gut microbiome in gastrointestinal cancer: a friend or foe
10.7150/ijbs.69331 · 2022 · External reference
Metagenome analysis using the Kraken software suite
10.1038/s41596-022-00738-y · 2022 · External reference
Faecalibacterium: a bacterial genus with promising human health applications
10.1093/femsre/fuad039 · 2023 · External reference
The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients
10.1126/science.aao3290 · 2018 · External reference
Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host
10.1038/s41586-018-0125-z · 2018 · External reference
Determining cell type abundance and expression from bulk tissues with digital cytometry
10.1038/s41587-019-0114-2 · 2019 · External reference
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
10.1093/nar/gkv1189 · 2016 · External reference
Microbiota as predictor of mortality in allogeneic hematopoietic-cell transplantation
10.1056/nejmoa1900623 · 2020 · External reference
Myeloid-derived suppressor cells as effectors of immune suppression in cancer
10.1002/ijc.30232 · 2016 · External reference
Association between blood microbiome and type 2 diabetes mellitus: A nested case-control study
10.1002/jcla.22842 · 2019 · External reference
Gut microbiota composition correlates with disease severity in myelodysplastic syndrome
10.18502/ijhoscr.v18i2.15377 · 2024 · External reference
Tumor microbiome diversity and composition influence pancreatic cancer outcomes
10.1016/j.cell.2019.07.008 · 2019 · External reference
Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors
10.1126/science.aan3706 · 2018 · External reference
Robustness of cancer microbiome signals over a broad range of methodological variation
10.1038/s41388-024-02974-w · 2024 · External reference
CEACAM1 inhibits Toll-like receptor 2-triggered antibacterial responses of human pulmonary epithelial cells
10.1038/ni.1661 · 2008 · External reference
The microbiota in hematologic Malignancies
10.1007/s11864-019-0693-7 · 2020 · External reference
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
10.1073/pnas.0506580102 · 2005 · External reference
No evidence for a common blood microbiome based on a population study of 9,770 healthy humans
10.1038/s41564-023-01350-w · 2023 · External reference
Increased levels of systemic LPS-positive bacterial extracellular vesicles in patients with intestinal barrier dysfunction
10.1136/gutjnl-2018-317726 · 2020 · External reference
Functional genomic landscape of acute myeloid leukaemia
10.1038/s41586-018-0623-z · 2018 · External reference
Gut microbiota regulates acute myeloid leukaemia via alteration of intestinal barrier function mediated by butyrate
10.1038/s41467-022-30240-8 · 2022 · External reference
Circulating microbial content in myeloid Malignancy patients is associated with disease subtypes and patient outcomes
10.1038/s41467-022-28678-x · 2022 · External reference
Benchmarking metagenomics tools for taxonomic classification
10.1016/j.cell.2019.07.010 · 2019 · External reference
clusterProfiler: an R package for comparing biological themes among gene clusters
10.1089/omi.2011.0118 · 2012 · External reference
Profiling of gut microbial dysbiosis in adults with myeloid leukemia
10.1002/2211-5463.13193 · 2021 · External reference
A cellular hierarchy framework for understanding heterogeneity and predicting drug response in acute myeloid leukemia
10.1038/s41591-022-01819-x · 2022 · External reference
