Research graph
References from Quantitative Proteomics Reveals Substrate-Specific Metabolic Adaptations for n-Alkane and Branched Alkane Degradation in Dietzia sp. CN-3. Local targets link to admitted publications; unresolved targets remain external evidence.
Development of a device to trap soil bacteria capable of degrading organic contaminants such as alkanes and polycyclic aromatic hydrocarbons
10.1016/j.jhazmat.2025.137690 · 2025 · External reference
Degradation of alkanes by bacteria
10.1111/j.1462-2920.2009.01948.x · 2009 · External reference
10.3390/microorganisms10091706
10.3390/microorganisms10091706 · External reference
Biotechnologies for marine oil spill cleanup: Indissoluable ties with microorganisms
10.1016/j.tibtech.2017.04.003 · 2017 · External reference
10.1201/9781315164700
10.1201/9781315164700 · External reference
Multi-omics association study of hexadecane degradation in haloarchaeal strain Halogranum rubrum RO2-11
10.1016/j.envres.2024.118751 · 2024 · External reference
10.3390/microorganisms11092195
10.3390/microorganisms11092195 · External reference
High efficiency degradation of alkanes and crude oil by a salt-tolerant bacterium Dietzia species CN-3
10.1016/j.ibiod.2017.01.029 · 2017 · External reference
Differential protein expression during growth on linear versus branched alkanes in the obligate marine hydrocarbon-degrading bacterium Alcanivorax borkumensis SK2T
10.1111/1462-2920.14620 · 2019 · External reference
Characterization of C16–C36 alkane degradation and oily sludge bioremediation by Rhodococcus erythropolis XP
10.1128/aem.02124-25 · 2025 · External reference
Diverse bacteria isolated from microtherm oil-production water
10.1007/s10482-013-0088-x · 2014 · External reference
Metabolic exchange with non-alkane-consuming Pseudomonas stutzeri SLG510A3-8 improves n-alkane biodegradation by the alkane degrader Dietzia sp. strain DQ12-45-1b
10.1128/aem.02931-19 · 2020 · External reference
Characterization of a novel long-chain n-alkane-degrading strain, Dietzia sp. E1
10.1515/znc-2010-11-1210 · 2010 · External reference
Degradation of petroleum hydrocarbons (C6–C40) and crude oil by a novel Dietzia strain
10.1016/j.biortech.2011.06.009 · 2011 · External reference
Degradation of n-alkanes and PAHs from the heavy crude oil using salt-tolerant bacterial consortia and analysis of their catabolic genes
10.1007/s11356-017-8446-2 · 2017 · External reference
Ecological risk assessment of heavy metal pollutants and total petroleum hydrocarbons in sediments of the Bohai Sea, China
10.1016/j.marpolbul.2022.114218 · 2022 · External reference
Comparative transcriptome analysis reveals different adaptation mechanisms for degradation of very long-chain and normal long-chain alkanes in Dietzia sp. DQ12-45-1b
10.1111/1462-2920.15928 · 2022 · External reference
AlmA involved in the long-chain n-alkane degradation pathway in Acinetobacter baylyi ADP1 is a Baeyer-Villiger monooxygenase
10.1128/aem.01625-23 · 2024 · External reference
The long-chain alkane metabolism network of Alcanivorax dieselolei
10.1038/ncomms6755 · 2014 · External reference
10.3389/fmicb.2013.00116
10.3389/fmicb.2013.00116 · External reference
Wide distribution of the sad gene cluster for sub-terminal oxidation in alkane utilizers
10.1111/1462-2920.16124 · 2022 · External reference
Genes involved in alkane degradation in the Alcanivorax hongdengensis strain A-11-3
10.1007/s00253-011-3818-x · 2012 · External reference
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
10.1038/nbt1232 · 2006 · External reference
Characterization of a CYP153 alkane hydroxylase gene in a gram-positive Dietzia sp. DQ12-45-1b and its "team role" with alkW1 in alkane degradation
10.1007/s00253-013-4821-1 · 2014 · External reference
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
10.1073/pnas.0609650104 · 2007 · External reference
Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp. strain DSM 17874
2007 · External reference
Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization
10.1128/jb.00072-06 · 2006 · External reference
iTRAQ-based quantitative proteomic analysis of Pseudomonas aeruginosa SJTD-1: A global response to n-octadecane induced stress
10.1016/j.jprot.2015.03.034 · 2015 · External reference
10.3390/microorganisms13092206
10.3390/microorganisms13092206 · External reference
Functional analysis of alkane hydroxylases from gram-negative and gram-positive bacteria
10.1128/jb.184.6.1733-1742.2002 · 2002 · External reference
10.3390/microorganisms11061537
10.3390/microorganisms11061537 · External reference
New alkane-responsive expression vectors for Escherichia coli and Pseudomonas
10.1006/plas.2001.1522 · 2001 · External reference
Modeling of the bacterial growth curve
10.1128/aem.56.6.1875-1881.1990 · 1990 · External reference
Quantitative proteomic analysis of differential proteins from Acinetobacter sp. HC8-3S responses to hydrocarbons
10.1007/s00284-026-04847-9 · 2026 · External reference
AupA and AupB are outer and inner membrane proteins involved in alkane uptake in Marinobacter hydrocarbonoclasticus SP17
10.1128/mbio.00520-18 · 2018 · External reference
Exoproteome analysis of Pseudomonas aeruginosa response to high alkane stress
10.1007/s00203-023-03749-9 · 2024 · External reference
10.3389/fmicb.2014.00711
10.3389/fmicb.2014.00711 · External reference
10.3389/fmicb.2018.03130
10.3389/fmicb.2018.03130 · External reference
Alkane chain length alters Dietzia sp. strain DQ12-45-1b biosurfactant production and cell surface activity
10.1128/aem.02497-12 · 2013 · External reference
Transcriptomic analyses elucidate adaptive differences of closely related strains of Pseudomonas aeruginosa in fuel
10.1128/aem.03249-16 · 2017 · External reference
Unravelling the role of the group 6 soluble di-iron monooxygenase (SDIMO) SmoABCD in alkane metabolism and chlorinated alkane degradation
10.1111/1751-7915.14453 · 2024 · External reference
The role of glutamine synthetase in energy production and glutamine metabolism during oxidative stress
10.1007/s10482-017-0829-3 · 2017 · External reference
Transcriptomic insights into lower biomass and higher cell-surface hydrophobicity of Dietzia natronolimnaea S-XJ-1 grown on alkanes compared to fatty acid esters
10.1016/j.ibiod.2022.105423 · 2022 · External reference
Regulation of alkane degradation pathway by a TetR family repressor via an autoregulation positive feedback mechanism in a gram-positive Dietzia bacterium
10.1111/mmi.13232 · 2016 · External reference
Two distinct monooxygenases for alkane oxidation in Nocardioides sp. strain CF8
10.1128/aem.67.11.4992-4998.2001 · 2001 · External reference
Structural basis for enzymatic terminal C–H bond functionalization of alkanes
10.1038/s41594-023-00958-0 · 2023 · External reference
Binding and translocation of substrate allosterically promotes functional interactions within the AlkB–AlkG electron transfer complex
10.1016/j.jmb.2025.169548 · 2026 · External reference
Significance of both alkB and P450 alkane-degrading systems in Tsukamurella tyrosinosolvens: Proteomic evidence
10.1007/s00253-022-11906-1 · 2022 · External reference
Identification of a Baeyer-Villiger monooxygenase sequence motif
10.1016/s0014-5793(02)02623-6 · 2002 · External reference
Baeyer-Villiger monooxygenases: Tunable oxidative biocatalysts
10.1021/acscatal.9b03396 · 2019 · External reference
New evidence for a hydroxylation pathway for anaerobic alkane degradation supported by analyses of functional genes and signature metabolites in oil reservoirs
10.1186/s13568-020-01174-5 · 2021 · External reference
Anaerobic biodegradation of the isoprenoid biomarkers pristane and phytane
10.1016/j.orggeochem.2013.10.010 · 2013 · External reference
Inducible long chain alcohol oxidase from alkane-grown Candida tropicalis
10.1007/bf00265821 · 1988 · External reference
Differential expression of the three Alcanivorax borkumensis SK2 genes coding for the P450 cytochromes involved in the assimilation of hydrocarbons
10.1111/1758-2229.12598 · 2017 · External reference
Multi-step oxidations catalyzed by cytochrome P450 enzymes: Processive vs. distributive kinetics and the issue of carbonyl oxidation in chemical mechanisms
10.1016/j.abb.2010.08.017 · 2011 · External reference
Degradation of the multiple branched alkane 2,6,10,14-tetramethyl-pentadecane (pristane) in Rhodococcus ruber and Mycobacterium neoaurum
10.1016/j.ibiod.2008.09.002 · 2009 · External reference
10.3389/fmicb.2017.01428
10.3389/fmicb.2017.01428 · External reference
Unsaturated lipid assimilation by Mycobacteria requires auxiliary cis-trans Enoyl CoA isomerase
10.1016/j.chembiol.2015.10.009 · 2015 · External reference
Metabolic and stress responses of Acinetobacter oleivorans DR1 during long-chain alkane degradation
10.1111/1751-7915.12852 · 2017 · External reference
Paired genomic and proteomic analysis of Acinetobacter towneri from waste sludge reveals an extensive repertoire of enzymes for breakdown of hydrocarbons
10.1128/spectrum.00054-26 · 2026 · External reference
Two novel alkane hydroxylase-rubredoxin fusion genes isolated from a Dietzia bacterium and the functions of fused rubredoxin domains in long-chain n-alkane degradation
10.1128/aem.00203-11 · 2011 · External reference
Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5
10.1111/j.1462-2920.2010.02416.x · 2011 · External reference
New alkane-responsive expression vectors for Escherichia coli and Pseudomonas
10.1006/plas.2001.1522 · ExternalCitation · doi-reference
Inducible long chain alcohol oxidase from alkane-grown Candida tropicalis
10.1007/bf00265821 · ExternalCitation · doi-reference
Exoproteome analysis of Pseudomonas aeruginosa response to high alkane stress
10.1007/s00203-023-03749-9 · ExternalCitation · doi-reference
Genes involved in alkane degradation in the Alcanivorax hongdengensis strain A-11-3
10.1007/s00253-011-3818-x · ExternalCitation · doi-reference
Characterization of a CYP153 alkane hydroxylase gene in a gram-positive Dietzia sp. DQ12-45-1b and its "team role" with alkW1 in alkane degradation
10.1007/s00253-013-4821-1 · ExternalCitation · doi-reference
Significance of both alkB and P450 alkane-degrading systems in Tsukamurella tyrosinosolvens: Proteomic evidence
10.1007/s00253-022-11906-1 · ExternalCitation · doi-reference
Quantitative proteomic analysis of differential proteins from Acinetobacter sp. HC8-3S responses to hydrocarbons
10.1007/s00284-026-04847-9 · ExternalCitation · doi-reference
Diverse bacteria isolated from microtherm oil-production water
10.1007/s10482-013-0088-x · ExternalCitation · doi-reference
The role of glutamine synthetase in energy production and glutamine metabolism during oxidative stress
10.1007/s10482-017-0829-3 · ExternalCitation · doi-reference
Degradation of n-alkanes and PAHs from the heavy crude oil using salt-tolerant bacterial consortia and analysis of their catabolic genes
10.1007/s11356-017-8446-2 · ExternalCitation · doi-reference
Multi-step oxidations catalyzed by cytochrome P450 enzymes: Processive vs. distributive kinetics and the issue of carbonyl oxidation in chemical mechanisms
10.1016/j.abb.2010.08.017 · ExternalCitation · doi-reference
Degradation of petroleum hydrocarbons (C6–C40) and crude oil by a novel Dietzia strain
10.1016/j.biortech.2011.06.009 · ExternalCitation · doi-reference
Unsaturated lipid assimilation by Mycobacteria requires auxiliary cis-trans Enoyl CoA isomerase
10.1016/j.chembiol.2015.10.009 · ExternalCitation · doi-reference
Multi-omics association study of hexadecane degradation in haloarchaeal strain Halogranum rubrum RO2-11
10.1016/j.envres.2024.118751 · ExternalCitation · doi-reference
Degradation of the multiple branched alkane 2,6,10,14-tetramethyl-pentadecane (pristane) in Rhodococcus ruber and Mycobacterium neoaurum
10.1016/j.ibiod.2008.09.002 · ExternalCitation · doi-reference
High efficiency degradation of alkanes and crude oil by a salt-tolerant bacterium Dietzia species CN-3
10.1016/j.ibiod.2017.01.029 · ExternalCitation · doi-reference
Transcriptomic insights into lower biomass and higher cell-surface hydrophobicity of Dietzia natronolimnaea S-XJ-1 grown on alkanes compared to fatty acid esters
10.1016/j.ibiod.2022.105423 · ExternalCitation · doi-reference
Development of a device to trap soil bacteria capable of degrading organic contaminants such as alkanes and polycyclic aromatic hydrocarbons
10.1016/j.jhazmat.2025.137690 · ExternalCitation · doi-reference
Binding and translocation of substrate allosterically promotes functional interactions within the AlkB–AlkG electron transfer complex
10.1016/j.jmb.2025.169548 · ExternalCitation · doi-reference
iTRAQ-based quantitative proteomic analysis of Pseudomonas aeruginosa SJTD-1: A global response to n-octadecane induced stress
10.1016/j.jprot.2015.03.034 · ExternalCitation · doi-reference
Ecological risk assessment of heavy metal pollutants and total petroleum hydrocarbons in sediments of the Bohai Sea, China
10.1016/j.marpolbul.2022.114218 · ExternalCitation · doi-reference
Anaerobic biodegradation of the isoprenoid biomarkers pristane and phytane
10.1016/j.orggeochem.2013.10.010 · ExternalCitation · doi-reference
Biotechnologies for marine oil spill cleanup: Indissoluable ties with microorganisms
10.1016/j.tibtech.2017.04.003 · ExternalCitation · doi-reference
Identification of a Baeyer-Villiger monooxygenase sequence motif
10.1016/s0014-5793(02)02623-6 · ExternalCitation · doi-reference
Baeyer-Villiger monooxygenases: Tunable oxidative biocatalysts
10.1021/acscatal.9b03396 · ExternalCitation · doi-reference
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
10.1038/nbt1232 · ExternalCitation · doi-reference
The long-chain alkane metabolism network of Alcanivorax dieselolei
10.1038/ncomms6755 · ExternalCitation · doi-reference
Structural basis for enzymatic terminal C–H bond functionalization of alkanes
10.1038/s41594-023-00958-0 · ExternalCitation · doi-reference
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
10.1073/pnas.0609650104 · ExternalCitation · doi-reference
Differential protein expression during growth on linear versus branched alkanes in the obligate marine hydrocarbon-degrading bacterium Alcanivorax borkumensis SK2T
10.1111/1462-2920.14620 · ExternalCitation · doi-reference
Comparative transcriptome analysis reveals different adaptation mechanisms for degradation of very long-chain and normal long-chain alkanes in Dietzia sp. DQ12-45-1b
10.1111/1462-2920.15928 · ExternalCitation · doi-reference
Wide distribution of the sad gene cluster for sub-terminal oxidation in alkane utilizers
10.1111/1462-2920.16124 · ExternalCitation · doi-reference
Metabolic and stress responses of Acinetobacter oleivorans DR1 during long-chain alkane degradation
10.1111/1751-7915.12852 · ExternalCitation · doi-reference
Unravelling the role of the group 6 soluble di-iron monooxygenase (SDIMO) SmoABCD in alkane metabolism and chlorinated alkane degradation
10.1111/1751-7915.14453 · ExternalCitation · doi-reference
Differential expression of the three Alcanivorax borkumensis SK2 genes coding for the P450 cytochromes involved in the assimilation of hydrocarbons
10.1111/1758-2229.12598 · ExternalCitation · doi-reference
Degradation of alkanes by bacteria
10.1111/j.1462-2920.2009.01948.x · ExternalCitation · doi-reference
Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5
10.1111/j.1462-2920.2010.02416.x · ExternalCitation · doi-reference
Regulation of alkane degradation pathway by a TetR family repressor via an autoregulation positive feedback mechanism in a gram-positive Dietzia bacterium
10.1111/mmi.13232 · ExternalCitation · doi-reference
Two novel alkane hydroxylase-rubredoxin fusion genes isolated from a Dietzia bacterium and the functions of fused rubredoxin domains in long-chain n-alkane degradation
10.1128/aem.00203-11 · ExternalCitation · doi-reference
AlmA involved in the long-chain n-alkane degradation pathway in Acinetobacter baylyi ADP1 is a Baeyer-Villiger monooxygenase
10.1128/aem.01625-23 · ExternalCitation · doi-reference
Characterization of C16–C36 alkane degradation and oily sludge bioremediation by Rhodococcus erythropolis XP
10.1128/aem.02124-25 · ExternalCitation · doi-reference
Alkane chain length alters Dietzia sp. strain DQ12-45-1b biosurfactant production and cell surface activity
10.1128/aem.02497-12 · ExternalCitation · doi-reference
Metabolic exchange with non-alkane-consuming Pseudomonas stutzeri SLG510A3-8 improves n-alkane biodegradation by the alkane degrader Dietzia sp. strain DQ12-45-1b
10.1128/aem.02931-19 · ExternalCitation · doi-reference
Transcriptomic analyses elucidate adaptive differences of closely related strains of Pseudomonas aeruginosa in fuel
10.1128/aem.03249-16 · ExternalCitation · doi-reference
Modeling of the bacterial growth curve
10.1128/aem.56.6.1875-1881.1990 · ExternalCitation · doi-reference
Two distinct monooxygenases for alkane oxidation in Nocardioides sp. strain CF8
10.1128/aem.67.11.4992-4998.2001 · ExternalCitation · doi-reference
Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization
10.1128/jb.00072-06 · ExternalCitation · doi-reference
Functional analysis of alkane hydroxylases from gram-negative and gram-positive bacteria
10.1128/jb.184.6.1733-1742.2002 · ExternalCitation · doi-reference
AupA and AupB are outer and inner membrane proteins involved in alkane uptake in Marinobacter hydrocarbonoclasticus SP17
10.1128/mbio.00520-18 · ExternalCitation · doi-reference
Paired genomic and proteomic analysis of Acinetobacter towneri from waste sludge reveals an extensive repertoire of enzymes for breakdown of hydrocarbons
10.1128/spectrum.00054-26 · ExternalCitation · doi-reference
New evidence for a hydroxylation pathway for anaerobic alkane degradation supported by analyses of functional genes and signature metabolites in oil reservoirs
10.1186/s13568-020-01174-5 · ExternalCitation · doi-reference
10.1201/9781315164700
10.1201/9781315164700 · ExternalCitation · doi-reference
Characterization of a novel long-chain n-alkane-degrading strain, Dietzia sp. E1
10.1515/znc-2010-11-1210 · ExternalCitation · doi-reference
10.3389/fmicb.2013.00116
10.3389/fmicb.2013.00116 · ExternalCitation · doi-reference
10.3389/fmicb.2014.00711
10.3389/fmicb.2014.00711 · ExternalCitation · doi-reference
10.3389/fmicb.2017.01428
10.3389/fmicb.2017.01428 · ExternalCitation · doi-reference
10.3389/fmicb.2018.03130
10.3389/fmicb.2018.03130 · ExternalCitation · doi-reference
10.3390/microorganisms10091706
10.3390/microorganisms10091706 · ExternalCitation · doi-reference
10.3390/microorganisms11061537
10.3390/microorganisms11061537 · ExternalCitation · doi-reference
10.3390/microorganisms11092195
10.3390/microorganisms11092195 · ExternalCitation · doi-reference
10.3390/microorganisms13092206
10.3390/microorganisms13092206 · ExternalCitation · doi-reference
