Research graph
References from Cervicovaginal Virome Restructuring Associated with HPV Status, Bacterial Dysbiosis, and Cervical Cytological Abnormalities. Local targets link to admitted publications; unresolved targets remain external evidence.
10.3389/fimmu.2024.1374545
10.3389/fimmu.2024.1374545 · External reference
The vaginal microbiota, human papillomavirus infection and cervical intraepithelial neoplasia: What do we know and where are we going next?
10.1186/s40168-016-0203-0 · 2016 · External reference
10.3389/fmicb.2024.1515258
10.3389/fmicb.2024.1515258 · External reference
Unresolved reference
External reference
HPV genotypes in high-grade cervical lesions and invasive cervical carcinoma detected in Gabonese women
10.1186/s13027-023-00493-z · 2023 · External reference
Causal attribution of human papillomavirus genotypes to invasive cervical cancer worldwide: A systematic analysis of the global literature
10.1016/s0140-6736(24)01097-3 · 2024 · External reference
10.3389/fcimb.2022.927131
10.3389/fcimb.2022.927131 · External reference
10.1371/journal.pbio.3002949
10.1371/journal.pbio.3002949 · External reference
10.3389/fcimb.2025.1634251
10.3389/fcimb.2025.1634251 · External reference
10.3390/ijms25179168
10.3390/ijms25179168 · External reference
10.3390/microorganisms11030636
10.3390/microorganisms11030636 · External reference
10.3390/ijms26093954
10.3390/ijms26093954 · External reference
10.3389/fonc.2019.00682
10.3389/fonc.2019.00682 · External reference
HPV infection alters vaginal microbiome through down-regulating host mucosal innate peptides used by Lactobacilli as amino acid sources
10.1038/s41467-022-28724-8 · 2022 · External reference
10.3389/fcimb.2026.1767224
10.3389/fcimb.2026.1767224 · External reference
Cervicovaginal DNA virome alterations are associated with genital inflammation and microbiota composition
10.1128/msystems.00064-22 · 2022 · External reference
A multi-kingdom collection of 33,804 reference genomes for the human vaginal microbiome
10.1038/s41564-024-01751-5 · 2024 · External reference
Expansion of bacteriophages is linked to aggravated intestinal inflammation and colitis
10.1016/j.chom.2019.01.008 · 2019 · External reference
Towards a deeper understanding of the vaginal microbiota
10.1038/s41564-022-01083-2 · 2022 · External reference
Vaginal microbiome of reproductive-age women
10.1073/pnas.1002611107 · 2011 · External reference
The vaginal microbiota, human papillomavirus infection, and cervical carcinogenesis: A systematic review in the Latina population
10.1007/s44197-024-00201-z · 2024 · External reference
10.3390/vaccines13070679
10.3390/vaccines13070679 · External reference
10.3390/vaccines13111151
10.3390/vaccines13111151 · External reference
The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: Guidelines for reporting observational studies
10.1016/s0140-6736(07)61602-x · 2007 · External reference
Reporting guidelines for human microbiome research: The STORMS checklist
10.1038/s41591-021-01552-x · 2021 · External reference
10.1007/978-3-319-11074-5
10.1007/978-3-319-11074-5 · External reference
The impact of DNA polymerase and number of rounds of amplification in PCR on 16S rRNA gene sequence data
10.1128/msphere.00163-19 · 2019 · External reference
fastp: An ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
Improved metagenomic analysis with Kraken 2
10.1186/s13059-019-1891-0 · 2019 · External reference
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
10.1093/bioinformatics/btv033 · 2015 · External reference
Identification of mobile genetic elements with geNomad
10.1038/s41587-023-01953-y · 2024 · External reference
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
10.1038/s41587-020-00774-7 · 2021 · External reference
Pharokka: A fast scalable bacteriophage annotation tool
10.1093/bioinformatics/btac776 · 2023 · External reference
Scikit-bio: A fundamental Python library for biological omic data analysis
10.1038/s41592-025-02981-z · 2026 · External reference
Enterococcus dysbiosis as a mediator of vitamin D deficiency-associated memory impairments
10.1016/j.heliyon.2025.e41969 · 2025 · External reference
SciPy 1.0: Fundamental algorithms for scientific computing in Python
10.1038/s41592-019-0686-2 · 2020 · External reference
10.25080/majora-92bf1922-011
10.25080/majora-92bf1922-011 · External reference
Matplotlib: A 2D graphics environment
10.1109/mcse.2007.55 · 2007 · External reference
seaborn: Statistical data visualization
10.21105/joss.03021 · 2021 · External reference
Unresolved reference
External reference
The role of multiple high-risk human papillomavirus infection on the persistence/recurrence of high-grade cervical lesions after standard treatment: A systematic review and a meta-analysis
10.1111/aogs.14827 · 2024 · External reference
Human papillomavirus infection with multiple types: Pattern of coinfection and risk of cervical disease
10.1093/infdis/jiq139 · 2011 · External reference
The human virome: Assembly, composition and host interactions
10.1038/s41579-021-00536-5 · 2021 · External reference
Classification and evolution of human papillomavirus genome variants: Alpha-5 (HPV26, 51, 69, 82), Alpha-6 (HPV30, 53, 56, 66), Alpha-11 (HPV34, 73), Alpha-13 (HPV54) and Alpha-3 (HPV61)
10.1016/j.virol.2018.01.002 · 2018 · External reference
10.1371/journal.pone.0020183
10.1371/journal.pone.0020183 · External reference
A novel Staphylococcus podophage encodes a unique lysin with unusual modular design
10.1128/msphere.00040-17 · 2017 · External reference
Structure and host specificity of Staphylococcus epidermidis bacteriophage Andhra
10.1126/sciadv.ade0459 · 2022 · External reference
Comprehensive scanning of prophages in Lactobacillus: Distribution, diversity, antibiotic resistance genes, and linkages with CRISPR-Cas systems
10.1128/msystems.01211-20 · 2021 · External reference
MaAsLin 3: Refining and extending generalized multivariable linear models for meta-omic association discovery
10.1038/s41592-025-02923-9 · 2026 · External reference
10.1007/978-3-319-11074-5
10.1007/978-3-319-11074-5 · ExternalCitation · doi-reference
The vaginal microbiota, human papillomavirus infection, and cervical carcinogenesis: A systematic review in the Latina population
10.1007/s44197-024-00201-z · ExternalCitation · doi-reference
Expansion of bacteriophages is linked to aggravated intestinal inflammation and colitis
10.1016/j.chom.2019.01.008 · ExternalCitation · doi-reference
Enterococcus dysbiosis as a mediator of vitamin D deficiency-associated memory impairments
10.1016/j.heliyon.2025.e41969 · ExternalCitation · doi-reference
Classification and evolution of human papillomavirus genome variants: Alpha-5 (HPV26, 51, 69, 82), Alpha-6 (HPV30, 53, 56, 66), Alpha-11 (HPV34, 73), Alpha-13 (HPV54) and Alpha-3 (HPV61)
10.1016/j.virol.2018.01.002 · ExternalCitation · doi-reference
The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: Guidelines for reporting observational studies
10.1016/s0140-6736(07)61602-x · ExternalCitation · doi-reference
Causal attribution of human papillomavirus genotypes to invasive cervical cancer worldwide: A systematic analysis of the global literature
10.1016/s0140-6736(24)01097-3 · ExternalCitation · doi-reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · ExternalCitation · doi-reference
HPV infection alters vaginal microbiome through down-regulating host mucosal innate peptides used by Lactobacilli as amino acid sources
10.1038/s41467-022-28724-8 · ExternalCitation · doi-reference
Towards a deeper understanding of the vaginal microbiota
10.1038/s41564-022-01083-2 · ExternalCitation · doi-reference
A multi-kingdom collection of 33,804 reference genomes for the human vaginal microbiome
10.1038/s41564-024-01751-5 · ExternalCitation · doi-reference
The human virome: Assembly, composition and host interactions
10.1038/s41579-021-00536-5 · ExternalCitation · doi-reference
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
10.1038/s41587-020-00774-7 · ExternalCitation · doi-reference
Identification of mobile genetic elements with geNomad
10.1038/s41587-023-01953-y · ExternalCitation · doi-reference
Reporting guidelines for human microbiome research: The STORMS checklist
10.1038/s41591-021-01552-x · ExternalCitation · doi-reference
SciPy 1.0: Fundamental algorithms for scientific computing in Python
10.1038/s41592-019-0686-2 · ExternalCitation · doi-reference
MaAsLin 3: Refining and extending generalized multivariable linear models for meta-omic association discovery
10.1038/s41592-025-02923-9 · ExternalCitation · doi-reference
Scikit-bio: A fundamental Python library for biological omic data analysis
10.1038/s41592-025-02981-z · ExternalCitation · doi-reference
Vaginal microbiome of reproductive-age women
10.1073/pnas.1002611107 · ExternalCitation · doi-reference
Pharokka: A fast scalable bacteriophage annotation tool
10.1093/bioinformatics/btac776 · ExternalCitation · doi-reference
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
10.1093/bioinformatics/btv033 · ExternalCitation · doi-reference
fastp: An ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · ExternalCitation · doi-reference
Human papillomavirus infection with multiple types: Pattern of coinfection and risk of cervical disease
10.1093/infdis/jiq139 · ExternalCitation · doi-reference
Matplotlib: A 2D graphics environment
10.1109/mcse.2007.55 · ExternalCitation · doi-reference
The role of multiple high-risk human papillomavirus infection on the persistence/recurrence of high-grade cervical lesions after standard treatment: A systematic review and a meta-analysis
10.1111/aogs.14827 · ExternalCitation · doi-reference
Structure and host specificity of Staphylococcus epidermidis bacteriophage Andhra
10.1126/sciadv.ade0459 · ExternalCitation · doi-reference
A novel Staphylococcus podophage encodes a unique lysin with unusual modular design
10.1128/msphere.00040-17 · ExternalCitation · doi-reference
The impact of DNA polymerase and number of rounds of amplification in PCR on 16S rRNA gene sequence data
10.1128/msphere.00163-19 · ExternalCitation · doi-reference
Cervicovaginal DNA virome alterations are associated with genital inflammation and microbiota composition
10.1128/msystems.00064-22 · ExternalCitation · doi-reference
Comprehensive scanning of prophages in Lactobacillus: Distribution, diversity, antibiotic resistance genes, and linkages with CRISPR-Cas systems
10.1128/msystems.01211-20 · ExternalCitation · doi-reference
HPV genotypes in high-grade cervical lesions and invasive cervical carcinoma detected in Gabonese women
10.1186/s13027-023-00493-z · ExternalCitation · doi-reference
Improved metagenomic analysis with Kraken 2
10.1186/s13059-019-1891-0 · ExternalCitation · doi-reference
The vaginal microbiota, human papillomavirus infection and cervical intraepithelial neoplasia: What do we know and where are we going next?
10.1186/s40168-016-0203-0 · ExternalCitation · doi-reference
10.1371/journal.pbio.3002949
10.1371/journal.pbio.3002949 · ExternalCitation · doi-reference
10.1371/journal.pone.0020183
10.1371/journal.pone.0020183 · ExternalCitation · doi-reference
seaborn: Statistical data visualization
10.21105/joss.03021 · ExternalCitation · doi-reference
10.25080/majora-92bf1922-011
10.25080/majora-92bf1922-011 · ExternalCitation · doi-reference
10.3389/fcimb.2022.927131
10.3389/fcimb.2022.927131 · ExternalCitation · doi-reference
10.3389/fcimb.2025.1634251
10.3389/fcimb.2025.1634251 · ExternalCitation · doi-reference
10.3389/fcimb.2026.1767224
10.3389/fcimb.2026.1767224 · ExternalCitation · doi-reference
10.3389/fimmu.2024.1374545
10.3389/fimmu.2024.1374545 · ExternalCitation · doi-reference
10.3389/fmicb.2024.1515258
10.3389/fmicb.2024.1515258 · ExternalCitation · doi-reference
10.3389/fonc.2019.00682
10.3389/fonc.2019.00682 · ExternalCitation · doi-reference
10.3390/ijms25179168
10.3390/ijms25179168 · ExternalCitation · doi-reference
10.3390/ijms26093954
10.3390/ijms26093954 · ExternalCitation · doi-reference
10.3390/microorganisms11030636
10.3390/microorganisms11030636 · ExternalCitation · doi-reference
10.3390/vaccines13070679
10.3390/vaccines13070679 · ExternalCitation · doi-reference
10.3390/vaccines13111151
10.3390/vaccines13111151 · ExternalCitation · doi-reference
