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References from TattleTail: A Rule-Based Tool for Identifying Canonical Pyocin-Encoding Gene Clusters in Pseudomonas aeruginosa. Local targets link to admitted publications; unresolved targets remain external evidence.
10.4161/viru.24498
10.4161/viru.24498 · External reference
10.1016/j.chom.2024.05.006
10.1016/j.chom.2024.05.006 · External reference
Prophages in the infant gut are pervasively induced and may modulate the functionality of their hosts
10.1038/s41522-025-00674-1 · 2025 · External reference
Prophages mediate defense against phage infection through diverse mechanisms
10.1038/ismej.2016.79 · 2016 · External reference
10.1038/ismej.2017.16
10.1038/ismej.2017.16 · External reference
Bacteriocins, antimicrobial peptides from bacterial origin: Overview of their biology and their impact against multidrug-resistant bacteria
10.3390/microorganisms8050639 · 2020 · External reference
A phage tail-like bacteriocin suppresses competitors in metapopulations of pathogenic bacteria
10.1126/science.ado0713 · 2024 · External reference
Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
10.1038/s41396-021-00921-1 · 2021 · External reference
Lipopolysaccharide as shield and receptor for R-pyocin-mediated killing in Pseudomonas aeruginosa
10.1128/jb.01459-09 · 2010 · External reference
The R-type pyocin of Pseudomonas aeruginosa is related to P2 phage, and the F-type is related to lambda phage
10.1046/j.1365-2958.2000.02135.x · 2000 · External reference
Study of 32 new phage tail-like bacteriocins (pyocins) from a clinical collection of Pseudomonas aeruginosa and of their potential use as typing markers and antimicrobial agents
10.1038/s41598-022-27341-1 · 2023 · External reference
F-type pyocins are diverse noncontractile phage tail-like weapons for killing Pseudomonas aeruginosa
10.1128/jb.00029-23 · 2023 · External reference
PHASTEST: Faster than PHASTER, better than PHAST
10.1093/nar/gkad382 · 2023 · External reference
Phigaro: High-throughput prophage sequence annotation
10.1093/bioinformatics/btaa250 · 2020 · External reference
PhiSpy: A novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
10.1093/nar/gks406 · 2012 · External reference
VirSorter: Mining viral signal from microbial genomic data
10.7717/peerj.985 · 2015 · External reference
Prophage Hunter: An integrative hunting tool for active prophages
10.1093/nar/gkz380 · 2019 · External reference
Prophinder: A computational tool for prophage prediction in prokaryotic genomes
10.1093/bioinformatics/btn043 · 2008 · External reference
10.1016/j.tim.2024.04.001
10.1016/j.tim.2024.04.001 · External reference
10.1111/1574-6976.12079
10.1111/1574-6976.12079 · External reference
R-pyocins as targeted antimicrobials against Pseudomonas aeruginosa
10.1038/s44259-025-00088-1 · 2025 · External reference
Microbial Primer: The R-pyocins of Pseudomonas aeruginosa
10.1099/mic.0.001640 · 2025 · External reference
10.1093/gbe/evv184
10.1093/gbe/evv184 · External reference
Live cell dynamics of production, explosive release and killing activity of phage tail-like weapons for Pseudomonas kin exclusion
10.1038/s42003-020-01581-1 · 2021 · External reference
Twilight zone of protein sequence alignments
10.1093/protein/12.2.85 · 1999 · External reference
Unresolved reference
External reference
Unresolved reference
2014 · External reference
Using SPAdes de novo assembler
10.1002/cpbi.102 · 2020 · External reference
Proksee: In-depth characterization and visualization of bacterial genomes
10.1093/nar/gkad326 · 2023 · External reference
The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024
10.1093/nar/gkae241 · 2024 · External reference
Antibacterial efficacy of R-type pyocins towards Pseudomonas aeruginosa in a murine peritonitis model
10.1128/aac.01479-07 · 2008 · External reference
Bakta Web—Rapid and standardized genome annotation on scalable infrastructures
10.1093/nar/gkaf335 · 2025 · External reference
Bakta: Rapid and standardized annotation of bacterial genomes via alignment-free sequence identification
2021 · External reference
Identification of an R1-type pyocin previously misannotated as a prophage in Pseudomonas aeruginosa ATCC 27853
2026 · External reference
10.1093/bioinformatics/btr703
10.1093/bioinformatics/btr703 · External reference
JBrowse 2: A modular genome browser with views of synteny and structural variation
10.1186/s13059-023-02914-z · 2023 · External reference
10.32614/cran.package.geneviewer
10.32614/cran.package.geneviewer · External reference
10.1038/nbt.1754
10.1038/nbt.1754 · External reference
igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)
10.1093/bioinformatics/btac830 · 2023 · External reference
10.1016/s0022-2836(05)80360-2
10.1016/s0022-2836(05)80360-2 · External reference
A completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core
10.1016/j.jmb.2017.12.007 · 2018 · External reference
Protein sequence analysis using the MPI Bioinformatics Toolkit
10.1002/cpbi.108 · 2020 · External reference
10.1038/s41586-024-07487-w
10.1038/s41586-024-07487-w · External reference
BacAnt: A combination annotation server for bacterial DNA sequences to identify antibiotic resistance genes, Integrons, and transposable elements
10.3389/fmicb.2021.649969 · 2021 · External reference
ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes
10.1128/aac.01310-13 · 2014 · External reference
Easy identification of insertion sequence mobilization events in related bacterial strains with ISCompare
10.1093/g3journal/jkab181 · 2021 · External reference
Pdif-mediated antibiotic resistance genes transfer in bacteria identified by pdifFinder
10.1093/bib/bbac521 · 2023 · External reference
Identification and classification of reverse transcriptases in bacterial genomes and metagenomes
10.1093/nar/gkab1207 · 2022 · External reference
PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes
10.1093/bib/bbx121 · 2019 · External reference