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References from COMPUTATIONAL APPROACHES FOR RATIONAL DESIGN OF PROTEINS WITH NOVEL FUNCTIONALITIES. Local targets link to admitted publications; unresolved targets remain external evidence.
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Free modeling with Rosetta in CASP6
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Ab initio protein structure prediction: progress and prospects
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De novo design of foldable proteins with smooth folding funnel: automated negative design and experimental verification
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Automatic procedures for protein design
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Automatic sequence design of major histocompatibility complex class I binding peptides impairing CD8+ T cell recognition
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Novel metal-binding proteins by design
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10.1073/pnas.94.11.5562
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Construction of new ligand binding sites in proteins of known structure. I. Computer-aided modeling of sites with pre-defined geometry
10.1016/0022-2836(91)90510-d · 1991 · External reference
10.1146/annurev.bi.54.070185.001321
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Stability of oxidized Escherichia coli thioredoxin and its dependence on protonation of the aspartic acid residue in the 26 position
10.1021/bi00080a026 · 1993 · External reference
The dead-end elimination theorem and its use in protein side-chain positioning
10.1038/356539a0 · 1992 · External reference
10.1038/nchembio.777
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Combined enzyme and substrate design: grafting of a cooperative two-histidine catalytic motif into a protein targeted at the scissile bond in a designed ester substrate
10.1002/cbic.200600540 · 2007 · External reference
10.1126/science.1190239
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10.1016/s0022-2836(03)00888-x
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Energy functions for protein design
10.1016/s0959-440x(99)80072-4 · 1999 · External reference
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A tetrahedral zinc(II)-binding site introduced into a designed protein
10.1021/bi00501a003 · 1990 · External reference
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The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem
10.1093/protein/6.7.717 · 1993 · External reference
Ab initio protein structure prediction of CASP III targets using ROSETTA
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10.1371/journal.pone.0019230
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The 2010 Rosetta developers meeting: macromolecular prediction and design meets reproducible publishing
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10.1002/prot.23241
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10.1002/jcc.21050
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Redesigning protein pKa values
10.1110/ps.062538707 · 2007 · External reference
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10.1016/j.jmb.2012.05.022
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10.1371/journal.pone.0018934
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Structure-based prediction of protein-peptide specificity in Rosetta
10.1002/prot.22851 · 2010 · External reference
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Crystal structure of a monomeric retroviral protease solved by protein folding game players
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Bio-inorganic chemistry
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Spectroscopic and metal-binding properties of DF3: an artificial protein able to accommodate different metal ions
10.1007/s00775-010-0639-9 · 2010 · External reference
10.1038/nature08304
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Mutations at the histidine 249 ligand profoundly alter the spectral and iron-binding properties of human serum transferrin N-lobe
10.1021/bi9915216 · 2000 · External reference
10.1016/s1074-5521(96)90132-5
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10.1016/s1074-5521(99)80116-1
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Site-selective metal binding by designed alpha-helical peptides
10.1021/ja055433m · 2005 · External reference
Role of conserved glycine in zinc-dependent medium chain dehydrogenase/reductase superfamily
10.1074/jbc.m111.335752 · 2012 · External reference
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Characterization of metal binding by a designed protein: single ligand substitutions at a tetrahedral Cys2His2 site
10.1021/bi00031a034 · 1995 · External reference
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Scorpion toxins as natural scaffolds for protein engineering
10.1073/pnas.92.14.6404 · 1995 · External reference
Grafting of a high-affinity Zn(II)-binding site on the beta-barrel of retinol-binding protein results in enhanced folding stability and enables simplified purification
10.1021/bi00251a023 · 1994 · External reference
Construction and characterization of an azurin analog for the purple copper site in cytochrome c oxidase
10.1073/pnas.93.1.461 · 1996 · External reference
Structural basis of electron transfer modulation in the purple CuA center
10.1021/bi9901634 · 1999 · External reference
Introduction of a CuA site into the blue copper protein amicyanin from Thiobacillus versutus
10.1016/0014-5793(95)00429-d · 1995 · External reference
10.1074/jbc.m308863200
10.1074/jbc.m308863200 · External reference
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10.1016/j.bmc.2004.03.077
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Engineering antibodies for stability and efficient folding
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10.1016/j.str.2008.09.012
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