Research graph
References from COMPUTATIONAL TOOLS FOR THE SECONDARY ANALYSIS OF METABOLOMICS EXPERIMENTS. Local targets link to admitted publications; unresolved targets remain external evidence.
HMDB: The human metabolome database
10.1093/nar/gkl923 · 2007 · External reference
10.1038/227561a0
10.1038/227561a0 · External reference
10.1023/a:1013713905833
10.1023/a:1013713905833 · External reference
Measuring the metabolome: Current analytical technologies
10.1039/b418288j · 2005 · External reference
Unresolved reference
External reference
Metabolomics analysis II. Preparation of biological samples prior to detection
10.1016/j.trac.2009.12.004 · 2010 · External reference
10.1016/j.trac.2009.12.003
10.1016/j.trac.2009.12.003 · External reference
Modern analytical techniques in metabolomics analysis
10.1039/c1an15605e · 2012 · External reference
10.1016/j.trac.2011.04.019
10.1016/j.trac.2011.04.019 · External reference
Computational approaches to metabolomics
10.1007/978-1-60327-194-3_14 · 2010 · External reference
10.1002/jssc.200900152
10.1002/jssc.200900152 · External reference
Metabolomics in the study of kidney diseases
10.1038/nrneph.2011.152 · 2012 · External reference
Metabolomics in coronary heart disease
2012 · External reference
The role of metabolomics in neurological disease
10.1016/j.jneuroim.2012.01.009 · 2012 · External reference
Clinical applications of metabolomics in oncology: A review
10.1158/1078-0432.ccr-08-1059 · 2009 · External reference
10.1007/s11033-012-1584-1
10.1007/s11033-012-1584-1 · External reference
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
10.1093/nar/gkn923 · 2009 · External reference
10.1088/1478-3975/5/1/011001
10.1088/1478-3975/5/1/011001 · External reference
Processing and analysis of GC/LC-MS-based metabolomics data
10.1007/978-1-61737-985-7_17 · 2011 · External reference
Innovation: Metabolomics: the apogee of the omics trilogy
10.1038/nrm3314 · 2012 · External reference
Recent developments in environmental metabolomics
10.1039/b805354e · 2008 · External reference
Environmental metabolomics: A critical review and future perspectives
10.1007/s11306-008-0152-0 · 2009 · External reference
Metabolomics data and the biomarker qualification process
10.1007/s11306-011-0342-z · 2012 · External reference
Pathway Activity Profiling (PAPi): from the metabolite profile to the metabolic pathway activity
10.1093/bioinformatics/btq567 · 2010 · External reference
MetaMapp: Mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity
10.1186/1471-2105-13-99 · 2012 · External reference
Integration of metabolome data with metabolic networks reveals reporter reactions
10.1038/msb4100085 · 2006 · External reference
MBRole: Enrichment analysis of metabolomic data
10.1093/bioinformatics/btr001 · 2011 · External reference
MetExplore: A web server to link metabolomic experiments and genome-scale metabolic networks
10.1093/nar/gkq312 · 2010 · External reference
MPEA-metabolite pathway enrichment analysis
10.1093/bioinformatics/btr278 · 2011 · External reference
MSEA: Metabolite set enrichment analysis in the MeltDB metabolomics software platform: Metabolic profiling of Corynebacterium glutamicum as an example
10.1007/s11306-011-0311-6 · 2012 · External reference
A survey of metabolic databases emphasizing the MetaCyc family
2011 · External reference
Database resources in metabolomics: An overview
10.1007/s11481-009-9157-3 · 2010 · External reference
Extending biochemical databases by metabolomic surveys
10.1074/jbc.r110.173617 · 2011 · External reference
10.1007/4735_2007_0229
10.1007/4735_2007_0229 · External reference
FiehnLib: Mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry
10.1021/ac9019522 · 2009 · External reference
KEGG: Kyoto Encyclopedia of Genes and Genomes
10.1093/nar/28.1.27 · 2000 · External reference
Reactome: A database of reactions, pathways and biological processes
10.1093/nar/gkq1018 · 2011 · External reference
KNApSAcK family databases: Integrated metabolite-plant species databases for multifaceted plant research
2012 · External reference
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
10.1093/nar/gki866 · 2005 · External reference
BiGG: A Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
2010 · External reference
AraCyc: A biochemical pathway database for Arabidopsis
10.1104/pp.102.017236 · 2003 · External reference
10.1093/nar/gkp456
10.1093/nar/gkp456 · External reference
ChEBI: A database and ontology for chemical entities of biological interest
10.1093/nar/gkm791 · 2008 · External reference
Analysis of SciFinder scholar and web of science citation searches
10.1002/asi.10192 · 2002 · External reference
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
10.1093/nar/gkp875 · 2010 · External reference
10.1073/pnas.0506580102
10.1073/pnas.0506580102 · External reference
10.1093/nar/gkq329
10.1093/nar/gkq329 · External reference
10.1038/nbt.1567
10.1038/nbt.1567 · External reference
Tools for visually exploring biological networks
10.1093/bioinformatics/btm401 · 2007 · External reference
A survey of visualization tools for biological network analysis
10.1186/1756-0381-1-12 · 2008 · External reference
KEGG for integration and interpretation of large-scale molecular data sets
10.1093/nar/gkr988 · 2012 · External reference
10.1093/bib/bbp043
10.1093/bib/bbp043 · External reference
10.1093/bioinformatics/btq675
10.1093/bioinformatics/btq675 · External reference
Metscape: A Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
10.1093/bioinformatics/btq048 · 2010 · External reference
10.1109/tcbb.2008.79
10.1109/tcbb.2008.79 · External reference
10.1002/bit.22320
10.1002/bit.22320 · External reference
MetaboAnalyst: A web server for metabolomic data analysis and interpretation
10.1093/nar/gkp356 · 2009 · External reference
Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst
10.1038/nprot.2011.319 · 2011 · External reference
10.1093/bioinformatics/btq418
10.1093/bioinformatics/btq418 · External reference
MeltDB: A software platform for the analysis and integration of metabolomics experiment data
10.1093/bioinformatics/btn452 · 2008 · External reference
Meta P-server: A web-based metabolomics data analysis tool
2011 · External reference
MassTRIX: mass translator into pathways
10.1093/nar/gkn194 · 2008 · External reference
Masstrix reloaded: Combined analysis and visualization of tran-scriptome and metabolome data
2012 · External reference
Pathos: A web facility that uses metabolic maps to display experimental changes in metabolites identified by mass spectrometry
10.1002/rcm.5245 · 2011 · External reference
Paintomics: A web based tool for the joint visualization of transcriptomics and metabolomics data
10.1093/bioinformatics/btq594 · 2011 · External reference
10.1093/bioinformatics/btr499
10.1093/bioinformatics/btr499 · External reference
Vanted: A system for advanced data analysis and visualization in the context of biological networks
2006 · External reference
TICL – a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics
10.1111/j.1742-4658.2009.06943.x · 2009 · External reference
XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
10.1021/ac051437y · 2006 · External reference
A metabolomic and systems biology perspective on the brain of the Fragile X syndrome mouse model
10.1101/gr.116764.110 · 2011 · External reference
Environmental contaminant mixtures at ambient concentrations invoke a metabolic stress response in goldfish not predicted from exposure to individual compounds alone
10.1021/pr200840b · 2012 · External reference
The metabolic footprint of aging in mice
2011 · External reference
Beyond glucose: Metabolic shifts in responses to the effects of the oral glucose tolerance test and the high-fructose diet in rats
10.1039/c0mb00246a · 2011 · External reference
Urinary metabolomic analysis for the identification of renal injury in patients with acute heart failure
10.1111/j.1553-2712.2011.01239.x · 2012 · External reference
Dupuytren's disease metabolite analyses reveals alterations following initial short-term fibroblast culturing
10.1039/c2mb25173f · 2012 · External reference
Size exclusion chromatography-An improved method to harvest Corynebacterium glutamicum cells for the analysis of cytosolic metabolites
10.1016/j.jbiotec.2010.08.016 · 2011 · External reference
Sonic vibration affects the metabolism of yeast cells growing in liquid culture: A metabolomic study
10.1007/s11306-011-0360-x · 2012 · External reference
The biological interpretation of metabolomic data can be misled by the extraction method used
2011 · External reference
A comprehensive untargeted metabonomic analysis of human steatotic liver tissue by RP and HILIC chromatography coupled to mass spectrometry reveals important metabolic alterations
10.1021/pr200629p · 2011 · External reference
SMPDB: The small molecule pathway database
10.1093/nar/gkp1002 · 2010 · External reference
Metabolome in progression to Alzheimer's disease
2011 · External reference
Differences in Metabolism between the Biofilm and Planktonic Response to Metal Stress
10.1021/pr2002353 · 2011 · External reference
10.1017/s0007114512000827
10.1017/s0007114512000827 · External reference
The dynamic range of the human metabolome revealed by challenges
10.1096/fj.11-198093 · 2012 · External reference
10.5194/bg-9-1571-2012
10.5194/bg-9-1571-2012 · External reference
Zonation related function and ubiquitination regulation in human hepatocellular carcinoma cells in dynamic vs. static culture conditions
2012 · External reference
10.1093/mp/ssr114
10.1093/mp/ssr114 · External reference
10.1016/j.mito.2012.07.113
10.1016/j.mito.2012.07.113 · External reference
A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation
10.1039/c0mb00315h · 2011 · External reference
Metabolomics: A valuable tool for stem cell monitoring in regenerative medicine
10.1098/rsif.2012.0169 · 2012 · External reference
Visualizing post genomics data-sets on customized pathway maps by ProMeTra – Aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
10.1186/1752-0509-3-82 · 2009 · External reference
A genomic reappraisal of symbiotic function in the aphid/buchnera symbiosis: Reduced transporter sets and variable membrane organisations
2011 · External reference
Serum metabolomic profile as a means to distinguish stage of colorectal cancer
2012 · External reference
10.1021/pr200963e
10.1021/pr200963e · External reference
Integrating transcriptomics and metabonomics to unravel modes-of-action of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells
2011 · External reference
10.1097/sla.0b013e31824a9a8b
10.1097/sla.0b013e31824a9a8b · External reference
