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References from LEVERAGING BIOLOGICAL REPLICATES TO IMPROVE ANALYSIS IN CHIP-SEQ EXPERIMENTS. Local targets link to admitted publications; unresolved targets remain external evidence.
Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation
10.1016/s0968-0004(99)01535-2 · 2000 · External reference
10.1126/science.290.5500.2306
10.1126/science.290.5500.2306 · External reference
10.1038/35054095
10.1038/35054095 · External reference
10.1093/nar/gkn488
10.1093/nar/gkn488 · External reference
10.1126/science.1141319
10.1126/science.1141319 · External reference
10.1038/nmeth1068
10.1038/nmeth1068 · External reference
10.1016/j.cell.2007.05.009
10.1016/j.cell.2007.05.009 · External reference
10.1038/nature06008
10.1038/nature06008 · External reference
Characterization of the Contradictory Chromatin Signatures at the 3′ Exons of Zinc Finger Genes
10.1371/journal.pone.0017121 · 2011 · External reference
10.1038/nbt.1518
10.1038/nbt.1518 · External reference
10.1126/science.1169628
10.1126/science.1169628 · External reference
10.1038/nmeth.1985
10.1038/nmeth.1985 · External reference
10.1038/nrg2641
10.1038/nrg2641 · External reference
10.1371/journal.pone.0005241
10.1371/journal.pone.0005241 · External reference
10.1198/jasa.2011.ap09706
10.1198/jasa.2011.ap09706 · External reference
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
10.1093/nar/gkn425 · 2008 · External reference
10.1371/journal.pone.0011471
10.1371/journal.pone.0011471 · External reference
10.1093/nar/gkp536
10.1093/nar/gkp536 · External reference
Unresolved reference
External reference
10.1038/nrg863
10.1038/nrg863 · External reference
Design Considerations for Efficient and Effective Microarray Studies
10.1111/j.0006-341x.2003.00096.x · 2003 · External reference
A systematic statistical linear modeling approach to oligonucleotide array experiments
10.1016/s0025-5564(01)00107-9 · 2002 · External reference
10.1021/pr8010099
10.1021/pr8010099 · External reference
10.1186/1471-2105-11-94
10.1186/1471-2105-11-94 · External reference
RNA-seq: technical variability and sampling
2011 · External reference
10.1101/gr.136184.111
10.1101/gr.136184.111 · External reference
MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data
10.1186/gb-2011-12-2-r11 · 2011 · External reference
10.1093/nar/gks1300
10.1093/nar/gks1300 · External reference
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
10.1371/journal.pbio.1001046 · 2011 · External reference
10.1214/11-aoas466
10.1214/11-aoas466 · External reference
10.1038/nbt.1508
10.1038/nbt.1508 · External reference
Model-based Analysis of ChIP-Seq (MACS)
10.1186/gb-2008-9-9-r137 · 2008 · External reference
10.1038/nbt.1505
10.1038/nbt.1505 · External reference
10.1038/nmeth.1246
10.1038/nmeth.1246 · External reference
Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data
10.1093/nar/gkp1012 · 2009 · External reference
10.1093/bioinformatics/btr605
10.1093/bioinformatics/btr605 · External reference
10.1126/science.1186176
10.1126/science.1186176 · External reference
MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets
10.1186/gb-2012-13-3-r16 · 2012 · External reference
10.1093/bioinformatics/btn402
10.1093/bioinformatics/btn402 · External reference
10.1186/1471-2105-11-237
10.1186/1471-2105-11-237 · External reference
10.1128/jvi.07216-11
10.1128/jvi.07216-11 · External reference
10.1038/emboj.2012.155
10.1038/emboj.2012.155 · External reference
10.1016/j.molcel.2009.11.001
10.1016/j.molcel.2009.11.001 · External reference
10.1016/j.molcel.2009.11.002
10.1016/j.molcel.2009.11.002 · External reference
10.1038/nature09272
10.1038/nature09272 · External reference
10.1126/science.1183621
10.1126/science.1183621 · External reference
10.1210/me.2010-0454
10.1210/me.2010-0454 · External reference
Genome-Wide Location Analysis Reveals Distinct Transcriptional Circuitry by Paralogous Regulators Foxa1 and Foxa2
10.1371/journal.pgen.1002770 · 2012 · External reference
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
10.1186/gb-2009-10-3-r25 · 2009 · External reference
10.1038/nbt.1754
10.1038/nbt.1754 · External reference
10.1093/bib/bbs017
10.1093/bib/bbs017 · External reference
10.1038/nmeth.1226
10.1038/nmeth.1226 · External reference
Unresolved reference
1981 · External reference
Statistical methods for assessing agreement between two methods of clinical measurement
10.1016/s0140-6736(86)90837-8 · 1986 · External reference
Misleading Statistics: errors in textbooks, software and manuals
10.1093/ije/17.2.245 · 1988 · External reference
Unresolved reference
1992 · External reference
10.1016/s0021-9258(17)32128-2
10.1016/s0021-9258(17)32128-2 · External reference
Regulation of p53 tumour suppressor target gene expression by the p52 NF-[kappa]B subunit
10.1038/sj.emboj.7601343 · 2006 · External reference
10.1016/0092-8674(91)90022-q
10.1016/0092-8674(91)90022-q · External reference
NF-kappa B controls expression of inhibitor I kappa B alpha: evidence for an inducible autoregulatory pathway
10.1126/science.8096091 · 1993 · External reference
The characterization of the promoter of the gene encoding the p50 subunit of NF-kappa B indicates that it participates in its own regulation
10.1002/j.1460-2075.1992.tb05042.x · 1992 · External reference
10.1096/fj.08-111096
10.1096/fj.08-111096 · External reference
Induction of the BRCA2 Promoter by Nuclear Factor-κB
10.1074/jbc.m004390200 · 2000 · External reference
10.1074/jbc.m610141200
10.1074/jbc.m610141200 · External reference
Ago HITS-CLIP Expands Understanding of Kaposi's Sarcoma-associated Herpesvirus miRNA Function in Primary Effusion Lymphomas
10.1371/journal.ppat.1002884 · 2012 · External reference
10.1074/jbc.m110.217158
10.1074/jbc.m110.217158 · External reference
10.1101/gr.4887606
10.1101/gr.4887606 · External reference
Microarray data analysis: from disarray to consolidation and consensus
10.1038/nrg1749 · 2006 · External reference
10.1534/genetics.110.114983
10.1534/genetics.110.114983 · External reference
Unresolved reference
External reference
