Research graph
References from OpenLipid: a large language model workflow for targeted analysis of DIA mass spectrometry data in lipidomics. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nrm2330
10.1038/nrm2330 · External reference
10.1038/nrm2329
10.1038/nrm2329 · External reference
10.1194/jlr.m009449
10.1194/jlr.m009449 · External reference
10.1038/nrd1776
10.1038/nrd1776 · External reference
10.1016/j.jlr.2021.100164
10.1016/j.jlr.2021.100164 · External reference
10.3390/metabo2010019
10.3390/metabo2010019 · External reference
MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis
10.1038/nmeth.3393 · 2015 · External reference
10.1038/s41587-020-0531-2
10.1038/s41587-020-0531-2 · External reference
MS-DIAL 5 multimodal mass spectrometry data mining unveils lipidome complexities
10.1038/s41467-024-54137-w · 2024 · External reference
10.1146/annurev-anchem-071015-041535
10.1146/annurev-anchem-071015-041535 · External reference
Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
10.1074/mcp.o111.016717 · 2012 · External reference
10.1038/s41467-017-00249-5
10.1038/s41467-017-00249-5 · External reference
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial
10.15252/msb.20178126 · 2018 · External reference
Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues
10.1074/mcp.m114.044305 · 2015 · External reference
10.1002/mas.21400
10.1002/mas.21400 · External reference
DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution
10.1038/s41592-021-01195-3 · 2021 · External reference
Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data
10.1074/mcp.o114.047035 · 2015 · External reference
10.1038/nbt.2841
10.1038/nbt.2841 · External reference
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics
10.1038/s41467-022-29006-z · 2022 · External reference
10.1093/bioinformatics/btq054
10.1093/bioinformatics/btq054 · External reference
10.1021/acs.jproteome.9b00640
10.1021/acs.jproteome.9b00640 · External reference
Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions
10.1038/s41596-022-00714-6 · 2022 · External reference
10.1145/3560815
10.1145/3560815 · External reference
Large language models are zero-shot reasoners
2022 · External reference
Language Models are Few-Shot Learners
2020 · External reference
10.52202/068431-1800
10.52202/068431-1800 · External reference
10.64898/2026.02.11.705360
10.64898/2026.02.11.705360 · External reference
10.1021/acs.analchem.3c04400
10.1021/acs.analchem.3c04400 · External reference
10.1038/nbt.2377
10.1038/nbt.2377 · External reference
10.1002/mas.21400
10.1002/mas.21400 · ExternalCitation · doi-reference
10.1016/j.jlr.2021.100164
10.1016/j.jlr.2021.100164 · ExternalCitation · doi-reference
10.1021/acs.analchem.3c04400
10.1021/acs.analchem.3c04400 · ExternalCitation · doi-reference
10.1021/acs.jproteome.9b00640
10.1021/acs.jproteome.9b00640 · ExternalCitation · doi-reference
10.1038/nbt.2377
10.1038/nbt.2377 · ExternalCitation · doi-reference
10.1038/nbt.2841
10.1038/nbt.2841 · ExternalCitation · doi-reference
MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis
10.1038/nmeth.3393 · ExternalCitation · doi-reference
10.1038/nrd1776
10.1038/nrd1776 · ExternalCitation · doi-reference
10.1038/nrm2329
10.1038/nrm2329 · ExternalCitation · doi-reference
10.1038/nrm2330
10.1038/nrm2330 · ExternalCitation · doi-reference
10.1038/s41467-017-00249-5
10.1038/s41467-017-00249-5 · ExternalCitation · doi-reference
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics
10.1038/s41467-022-29006-z · ExternalCitation · doi-reference
MS-DIAL 5 multimodal mass spectrometry data mining unveils lipidome complexities
10.1038/s41467-024-54137-w · ExternalCitation · doi-reference
10.1038/s41587-020-0531-2
10.1038/s41587-020-0531-2 · ExternalCitation · doi-reference
DecoID improves identification rates in metabolomics through database-assisted MS/MS deconvolution
10.1038/s41592-021-01195-3 · ExternalCitation · doi-reference
Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions
10.1038/s41596-022-00714-6 · ExternalCitation · doi-reference
Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues
10.1074/mcp.m114.044305 · ExternalCitation · doi-reference
Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
10.1074/mcp.o111.016717 · ExternalCitation · doi-reference
Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data
10.1074/mcp.o114.047035 · ExternalCitation · doi-reference
10.1093/bioinformatics/btq054
10.1093/bioinformatics/btq054 · ExternalCitation · doi-reference
10.1145/3560815
10.1145/3560815 · ExternalCitation · doi-reference
10.1146/annurev-anchem-071015-041535
10.1146/annurev-anchem-071015-041535 · ExternalCitation · doi-reference
10.1194/jlr.m009449
10.1194/jlr.m009449 · ExternalCitation · doi-reference
Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial
10.15252/msb.20178126 · ExternalCitation · doi-reference
10.3390/metabo2010019
10.3390/metabo2010019 · ExternalCitation · doi-reference
10.52202/068431-1800
10.52202/068431-1800 · ExternalCitation · doi-reference
10.64898/2026.02.11.705360
10.64898/2026.02.11.705360 · ExternalCitation · doi-reference
