Research graph
References from Multi-model biological and sequence information fusion for gene regulatory network inference from single-cell transcriptomics. Local targets link to admitted publications; unresolved targets remain external evidence.
Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks
2014 · External reference
SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data
10.1186/s12918-018-0581-y · 2018 · External reference
10.1093/bioinformatics/btx194.
10.1093/bioinformatics/btx194. · External reference
10.1007/978-3-642-00296-0_5
10.1007/978-3-642-00296-0_5 · External reference
Gene regulatory network inference from single-cell data using multivariate information measures
10.1016/j.cels.2017.08.014 · 2017 · External reference
10.5351/csam.2015.22.6.665
10.5351/csam.2015.22.6.665 · External reference
10.1371/journal.pone.0012776
10.1371/journal.pone.0012776 · External reference
10.1093/bioinformatics/bty916
10.1093/bioinformatics/bty916 · External reference
SCENIC: single-cell regulatory network inference and clustering
10.1038/nmeth.4463 · 2017 · External reference
Supervised learning of gene-regulatory networks based on graph distance profiles of transcriptomics data
10.1038/s41540-020-0140-1 · 2020 · External reference
Modeling gene regulatory networks using neural network architectures
10.1038/s43588-021-00099-8 · 2021 · External reference
ceQTL: a co-expression QTL model to detect a variant that affects transcription factor binding and its target regulation
10.1093/bib/bbag258 · 2026 · External reference
GNE: a deep learning framework for gene network inference by aggregating biological information
2019 · External reference
10.1073/pnas.1911536116
10.1073/pnas.1911536116 · External reference
Inferring gene regulatory network from single-cell transcriptomes with graph autoencoder model
10.1371/journal.pgen.1010942 · 2023 · External reference
10.1093/bioinformatics/btac559
10.1093/bioinformatics/btac559 · External reference
scMGATGRN: a multiview graph attention network–based method for inferring gene regulatory networks from single-cell transcriptomic data
10.1093/bib/bbae526 · 2024 · External reference
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data
10.1038/s41592-019-0690-6 · 2020 · External reference
10.1093/nar/gkg034
10.1093/nar/gkg034 · External reference
10.1101/gr.240663.118
10.1101/gr.240663.118 · External reference
10.1093/database/bav095
10.1093/database/bav095 · External reference
10.1093/nar/gkx1013
10.1093/nar/gkx1013 · External reference
10.1038/s41586-020-2493-4
10.1038/s41586-020-2493-4 · External reference
ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data
10.15252/embr.201846255 · 2018 · External reference
10.1093/database/bat045
10.1093/database/bat045 · External reference
10.1093/bioinformatics/btr260
10.1093/bioinformatics/btr260 · External reference
10.1186/s12864-018-4772-0
10.1186/s12864-018-4772-0 · External reference
Autoencoder-based drug–target interaction prediction by preserving the consistency of chemical properties and functions of drugs
10.1093/bioinformatics/btab384 · 2021 · External reference
Autoencoders and their applications in machine learning: a survey
10.1007/s10462-023-10662-6 · 2024 · External reference
Unresolved reference
External reference
Transnormerllm: A faster and better large language model with improved transnormer
2023 · External reference
Empirical evaluation of gated recurrent neural networks on sequence modeling
2014 · External reference
Positional distribution of transcription factor binding sites in Arabidopsis thaliana
10.1038/srep25164 · 2016 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1007/978-3-030-01261-8_1
10.1007/978-3-030-01261-8_1 · External reference
Swish: A self-gated activation function
2017 · External reference
10.1109/tpami.2024.3386927
10.1109/tpami.2024.3386927 · External reference
10.1016/j.gpb.2019.09.006
10.1016/j.gpb.2019.09.006 · External reference
10.1016/b978-0-12-385991-4.00005-2
10.1016/b978-0-12-385991-4.00005-2 · External reference
10.1038/s41590-018-0311-z
10.1038/s41590-018-0311-z · External reference
10.1038/ni925
10.1038/ni925 · External reference
10.1155/2019/2609737
10.1155/2019/2609737 · External reference
Runx3 regulates integrin αE/CD103 and CD4 expression during development of CD4™/CD8+ T cells
10.4049/jimmunol.175.3.1694 · 2005 · External reference
Modulation of Krüppel-like factors (KLFs) interaction with their binding partners in cancers through acetylation and phosphorylation
10.1016/j.bbagrm.2023.195003 · 2024 · External reference
10.1093/database/baac083
10.1093/database/baac083 · External reference
10.1007/978-3-030-01261-8_1
10.1007/978-3-030-01261-8_1 · ExternalCitation · doi-reference
10.1007/978-3-642-00296-0_5
10.1007/978-3-642-00296-0_5 · ExternalCitation · doi-reference
Autoencoders and their applications in machine learning: a survey
10.1007/s10462-023-10662-6 · ExternalCitation · doi-reference
10.1016/b978-0-12-385991-4.00005-2
10.1016/b978-0-12-385991-4.00005-2 · ExternalCitation · doi-reference
Modulation of Krüppel-like factors (KLFs) interaction with their binding partners in cancers through acetylation and phosphorylation
10.1016/j.bbagrm.2023.195003 · ExternalCitation · doi-reference
Gene regulatory network inference from single-cell data using multivariate information measures
10.1016/j.cels.2017.08.014 · ExternalCitation · doi-reference
10.1016/j.gpb.2019.09.006
10.1016/j.gpb.2019.09.006 · ExternalCitation · doi-reference
10.1038/ni925
10.1038/ni925 · ExternalCitation · doi-reference
SCENIC: single-cell regulatory network inference and clustering
10.1038/nmeth.4463 · ExternalCitation · doi-reference
Supervised learning of gene-regulatory networks based on graph distance profiles of transcriptomics data
10.1038/s41540-020-0140-1 · ExternalCitation · doi-reference
10.1038/s41586-020-2493-4
10.1038/s41586-020-2493-4 · ExternalCitation · doi-reference
10.1038/s41590-018-0311-z
10.1038/s41590-018-0311-z · ExternalCitation · doi-reference
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data
10.1038/s41592-019-0690-6 · ExternalCitation · doi-reference
Modeling gene regulatory networks using neural network architectures
10.1038/s43588-021-00099-8 · ExternalCitation · doi-reference
Positional distribution of transcription factor binding sites in Arabidopsis thaliana
10.1038/srep25164 · ExternalCitation · doi-reference
10.1073/pnas.1911536116
10.1073/pnas.1911536116 · ExternalCitation · doi-reference
scMGATGRN: a multiview graph attention network–based method for inferring gene regulatory networks from single-cell transcriptomic data
10.1093/bib/bbae526 · ExternalCitation · doi-reference
ceQTL: a co-expression QTL model to detect a variant that affects transcription factor binding and its target regulation
10.1093/bib/bbag258 · ExternalCitation · doi-reference
Autoencoder-based drug–target interaction prediction by preserving the consistency of chemical properties and functions of drugs
10.1093/bioinformatics/btab384 · ExternalCitation · doi-reference
10.1093/bioinformatics/btac559
10.1093/bioinformatics/btac559 · ExternalCitation · doi-reference
10.1093/bioinformatics/btr260
10.1093/bioinformatics/btr260 · ExternalCitation · doi-reference
10.1093/bioinformatics/btx194.
10.1093/bioinformatics/btx194. · ExternalCitation · doi-reference
10.1093/bioinformatics/bty916
10.1093/bioinformatics/bty916 · ExternalCitation · doi-reference
10.1093/database/baac083
10.1093/database/baac083 · ExternalCitation · doi-reference
10.1093/database/bat045
10.1093/database/bat045 · ExternalCitation · doi-reference
10.1093/database/bav095
10.1093/database/bav095 · ExternalCitation · doi-reference
10.1093/nar/gkg034
10.1093/nar/gkg034 · ExternalCitation · doi-reference
10.1093/nar/gkx1013
10.1093/nar/gkx1013 · ExternalCitation · doi-reference
10.1101/gr.240663.118
10.1101/gr.240663.118 · ExternalCitation · doi-reference
10.1109/tpami.2024.3386927
10.1109/tpami.2024.3386927 · ExternalCitation · doi-reference
10.1155/2019/2609737
10.1155/2019/2609737 · ExternalCitation · doi-reference
10.1186/s12864-018-4772-0
10.1186/s12864-018-4772-0 · ExternalCitation · doi-reference
SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data
10.1186/s12918-018-0581-y · ExternalCitation · doi-reference
Inferring gene regulatory network from single-cell transcriptomes with graph autoencoder model
10.1371/journal.pgen.1010942 · ExternalCitation · doi-reference
10.1371/journal.pone.0012776
10.1371/journal.pone.0012776 · ExternalCitation · doi-reference
ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data
10.15252/embr.201846255 · ExternalCitation · doi-reference
Runx3 regulates integrin αE/CD103 and CD4 expression during development of CD4™/CD8+ T cells
10.4049/jimmunol.175.3.1694 · ExternalCitation · doi-reference
10.5351/csam.2015.22.6.665
10.5351/csam.2015.22.6.665 · ExternalCitation · doi-reference
