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References from Somatic haplotype reconstruction and variant recalibration from tumor-only long-read sequencing. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1126/science.1235122 · External reference
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10.1038/nature07943 · External reference
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10.1146/annurev-genom-101722-103045
10.1146/annurev-genom-101722-103045 · External reference
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10.1101/085050 · External reference
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10.1101/gr.213462.116 · External reference
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10.1101/gr.183053.114 · External reference
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10.1016/j.cell.2018.03.039 · External reference
ClairS-TO: a deep-learning method for long-read tumor-only somatic small variant calling
10.1038/s41467-025-64547-z · 2025 · External reference
Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities
10.1038/s41467-020-16399-y · 2020 · External reference
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10.1101/2024.09.27.615517 · External reference
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10.1073/pnas.2022410118 · External reference
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10.1186/s13059-016-1143-5 · External reference
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10.1038/nbt.4235 · ExternalCitation · doi-reference
10.1038/nm1087
10.1038/nm1087 · ExternalCitation · doi-reference
Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities
10.1038/s41467-020-16399-y · ExternalCitation · doi-reference
ClairS-TO: a deep-learning method for long-read tumor-only somatic small variant calling
10.1038/s41467-025-64547-z · ExternalCitation · doi-reference
10.1038/s41586-019-1186-3
10.1038/s41586-019-1186-3 · ExternalCitation · doi-reference
10.1038/s41586-019-1689-y
10.1038/s41586-019-1689-y · ExternalCitation · doi-reference
10.1038/s41587-021-00993-6
10.1038/s41587-021-00993-6 · ExternalCitation · doi-reference
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10.1038/s41588-018-0165-1
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Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms
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Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
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10.1093/bib/bbu002 · ExternalCitation · doi-reference
10.1093/bioinformatics/btac058
10.1093/bioinformatics/btac058 · ExternalCitation · doi-reference
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10.1093/bioinformatics/btv370 · ExternalCitation · doi-reference
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10.1101/085050 · ExternalCitation · doi-reference
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10.1101/2023.09.07.556731 · ExternalCitation · doi-reference
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10.1101/2024.08.09.607342 · ExternalCitation · doi-reference
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10.1101/2024.08.16.608331 · ExternalCitation · doi-reference
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10.1101/2024.09.27.615517 · ExternalCitation · doi-reference
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10.1101/2025.03.10.642523 · ExternalCitation · doi-reference
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10.1101/gr.129684.111 · ExternalCitation · doi-reference
10.1101/gr.183053.114
10.1101/gr.183053.114 · ExternalCitation · doi-reference
10.1101/gr.213462.116
10.1101/gr.213462.116 · ExternalCitation · doi-reference
10.1126/science.1235122
10.1126/science.1235122 · ExternalCitation · doi-reference
10.1126/science.959840
10.1126/science.959840 · ExternalCitation · doi-reference
10.1146/annurev-genom-101722-103045
10.1146/annurev-genom-101722-103045 · ExternalCitation · doi-reference
10.1158/2326-6066.cir-17-0201
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Whole-genome haplotyping approaches and genomic medicine
10.1186/s13073-014-0073-7 · ExternalCitation · doi-reference
10.1371/journal.pcbi.1005965
10.1371/journal.pcbi.1005965 · ExternalCitation · doi-reference
A long-read sequencing approach for direct haplotype phasing in clinical settings
10.3390/ijms21239177 · ExternalCitation · doi-reference
10.64898/2025.12.11.25342098
10.64898/2025.12.11.25342098 · ExternalCitation · doi-reference
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10.64898/2026.03.18.26348569 · ExternalCitation · doi-reference