Research graph
References from ssJSD: A Fusion of Sparsity and Spatial Information for HiC Single-Cell Clustering. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1126/science.1181369
10.1126/science.1181369 · External reference
10.1038/nature11082
10.1038/nature11082 · External reference
10.1038/s41576-018-0007-0
10.1038/s41576-018-0007-0 · External reference
10.1038/nature12593
10.1038/nature12593 · External reference
10.3390/genes8090223
10.3390/genes8090223 · External reference
10.1126/science.aat5641
10.1126/science.aat5641 · External reference
10.1038/s41586-021-04081-2
10.1038/s41586-021-04081-2 · External reference
10.1038/nature21429
10.1038/nature21429 · External reference
10.1038/nature21711
10.1038/nature21711 · External reference
Massively multiplex single-cell hi-c
10.1038/nmeth.4155 · 2017 · External reference
10.1101/gr.220640.117
10.1101/gr.220640.117 · External reference
10.1093/bioinformatics/bty285
10.1093/bioinformatics/bty285 · External reference
10.1073/pnas.1901423116
10.1073/pnas.1901423116 · External reference
Are dropout imputation methods for scRNA-seq effective for scHi-C data?
10.1093/bib/bbaa289 · 2021 · External reference
Single-Cell Hi-C Technologies and Computational Data Analysis
10.1002/advs.202412232 · 2025 · External reference
Single-cell hi-c for genome-wide detection of chromatin interactions that occur simultaneously in a single cell
10.1038/nprot.2015.127 · 2015 · External reference
10.1093/bib/bbab316
10.1093/bib/bbab316 · External reference
10.1093/bioinformatics/btz181
10.1093/bioinformatics/btz181 · External reference
10.1093/bioinformatics/bty164
10.1093/bioinformatics/bty164 · External reference
10.1038/s41587-021-01034-y
10.1038/s41587-021-01034-y · External reference
10.1371/journal.pcbi.1010158
10.1371/journal.pcbi.1010158 · External reference
10.1186/s12859-025-06147-8
10.1186/s12859-025-06147-8 · External reference
Unresolved reference
External reference
10.21105/joss.00861
10.21105/joss.00861 · External reference
Unresolved reference
External reference
10.1007/978-3-540-33037-0_14
10.1007/978-3-540-33037-0_14 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell hi-c data
2020 · External reference
10.1186/s13059-022-02774-z
10.1186/s13059-022-02774-z · External reference
10.3390/biology14030288
10.3390/biology14030288 · External reference
Simultaneous profiling of 3d genome structure and dna methylation in single human cells
10.1038/s41592-019-0547-z · 2019 · External reference
Single-Cell Hi-C Technologies and Computational Data Analysis
10.1002/advs.202412232 · ExternalCitation · doi-reference
10.1007/978-3-540-33037-0_14
10.1007/978-3-540-33037-0_14 · ExternalCitation · doi-reference
10.1038/nature11082
10.1038/nature11082 · ExternalCitation · doi-reference
10.1038/nature12593
10.1038/nature12593 · ExternalCitation · doi-reference
10.1038/nature21429
10.1038/nature21429 · ExternalCitation · doi-reference
10.1038/nature21711
10.1038/nature21711 · ExternalCitation · doi-reference
Massively multiplex single-cell hi-c
10.1038/nmeth.4155 · ExternalCitation · doi-reference
Single-cell hi-c for genome-wide detection of chromatin interactions that occur simultaneously in a single cell
10.1038/nprot.2015.127 · ExternalCitation · doi-reference
10.1038/s41576-018-0007-0
10.1038/s41576-018-0007-0 · ExternalCitation · doi-reference
10.1038/s41586-021-04081-2
10.1038/s41586-021-04081-2 · ExternalCitation · doi-reference
10.1038/s41587-021-01034-y
10.1038/s41587-021-01034-y · ExternalCitation · doi-reference
Simultaneous profiling of 3d genome structure and dna methylation in single human cells
10.1038/s41592-019-0547-z · ExternalCitation · doi-reference
10.1073/pnas.1901423116
10.1073/pnas.1901423116 · ExternalCitation · doi-reference
Are dropout imputation methods for scRNA-seq effective for scHi-C data?
10.1093/bib/bbaa289 · ExternalCitation · doi-reference
10.1093/bib/bbab316
10.1093/bib/bbab316 · ExternalCitation · doi-reference
10.1093/bioinformatics/bty164
10.1093/bioinformatics/bty164 · ExternalCitation · doi-reference
10.1093/bioinformatics/bty285
10.1093/bioinformatics/bty285 · ExternalCitation · doi-reference
10.1093/bioinformatics/btz181
10.1093/bioinformatics/btz181 · ExternalCitation · doi-reference
10.1101/gr.220640.117
10.1101/gr.220640.117 · ExternalCitation · doi-reference
10.1126/science.1181369
10.1126/science.1181369 · ExternalCitation · doi-reference
10.1126/science.aat5641
10.1126/science.aat5641 · ExternalCitation · doi-reference
10.1186/s12859-025-06147-8
10.1186/s12859-025-06147-8 · ExternalCitation · doi-reference
10.1186/s13059-022-02774-z
10.1186/s13059-022-02774-z · ExternalCitation · doi-reference
10.1371/journal.pcbi.1010158
10.1371/journal.pcbi.1010158 · ExternalCitation · doi-reference
10.21105/joss.00861
10.21105/joss.00861 · ExternalCitation · doi-reference
10.3390/biology14030288
10.3390/biology14030288 · ExternalCitation · doi-reference
10.3390/genes8090223
10.3390/genes8090223 · ExternalCitation · doi-reference
