Research graph
References from A Unified 3D Generative Model for Synthesizable Structure-Based Drug Design. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1021/acs.jcim.0c01009
10.1021/acs.jcim.0c01009 · External reference
10.1038/s41586-023-05905-z
10.1038/s41586-023-05905-z · External reference
10.1038/s41586-019-0917-9
10.1038/s41586-019-0917-9 · External reference
10.1002/(sici)1098-1128(199601)16:1<3::aid-med1>3.0.co;2-6
10.1002/(sici)1098-1128(199601)16:1<3::aid-med1>3.0.co;2-6 · External reference
10.1021/ci0255782
10.1021/ci0255782 · External reference
10.1002/minf.201700153
10.1002/minf.201700153 · External reference
10.1038/s42004-018-0068-1
10.1038/s42004-018-0068-1 · External reference
Automatic chemical design using a data-driven continuous representation of molecules
10.1021/acscentsci.7b00572 · 2018 · External reference
10.1080/14686996.2017.1401424
10.1080/14686996.2017.1401424 · External reference
10.1007/978-3-030-01418-6_41
10.1007/978-3-030-01418-6_41 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Optimizing molecules using efficient queries from property evaluations
2022 · External reference
Unresolved reference
External reference
10.1186/s13321-017-0235-x
10.1186/s13321-017-0235-x · External reference
Unresolved reference
External reference
Improving de novo molecular design with curriculum learning
10.1038/s42256-022-00494-4 · 2022 · External reference
Augmented memory: sample-efficient generative molecular design with reinforcement learning
10.1021/jacsau.4c00066 · 2024 · External reference
Sample-efficient generative molecular design using memory manipulation
10.1038/s42256-026-01200-4 · 2026 · External reference
Unresolved reference
External reference
A 3d generative model for structure-based drug design
2021 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Structure-based drug design with equivariant diffusion models
10.1038/s43588-024-00737-x · 2024 · External reference
10.1038/s43588-026-00998-8
10.1038/s43588-026-00998-8 · External reference
10.1021/acs.jmedchem.2c00487
10.1021/acs.jmedchem.2c00487 · External reference
10.1038/s41573-026-01496-2
10.1038/s41573-026-01496-2 · External reference
10.1021/acs.jcim.0c00174
10.1021/acs.jcim.0c00174 · External reference
10.1016/s1359-6446(02)02483-2
10.1016/s1359-6446(02)02483-2 · External reference
10.1038/nature03197
10.1038/nature03197 · External reference
10.1002/cmdc.200800178
10.1002/cmdc.200800178 · External reference
Unresolved reference
2007 · External reference
The next level in chemical space navigation: going far beyond enumerable compound libraries
10.1016/j.drudis.2019.02.013 · 2019 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1021/acs.jcim.0c00411
10.1021/acs.jcim.0c00411 · External reference
Augmented bindingnet dataset for enhanced ligand binding pose predictions using deep learning
10.1038/s44386-024-00003-0 · 2025 · External reference
Bigbind: learning from nonstructural data for structure-based virtual screening
2023 · External reference
10.1101/2024.07.17.603955
10.1101/2024.07.17.603955 · External reference
Posebusters: Ai-based docking methods fail to generate physically valid poses or generalise to novel sequences
10.1039/d3sc04185a · 2024 · External reference
10.1021/acs.jcim.8b00228
10.1021/acs.jcim.8b00228 · External reference
10.1038/s42256-024-00815-9
10.1038/s42256-024-00815-9 · External reference
10.1021/acs.jcim.9b01120
10.1021/acs.jcim.9b01120 · External reference
Unresolved reference
External reference
Quantifying the chemical beauty of drugs
10.1038/nchem.1243 · 2012 · External reference
10.1021/acs.jcim
10.1021/acs.jcim · External reference
10.1038/s41586-021-04220-9
10.1038/s41586-021-04220-9 · External reference
10.1016/j.isci.2020.101681
10.1016/j.isci.2020.101681 · External reference
10.1186/s13321-021-00522-2
10.1186/s13321-021-00522-2 · External reference
10.1101/2024.01.25.576086
10.1101/2024.01.25.576086 · External reference
10.1021/ja209924v
10.1021/ja209924v · External reference
10.1039/d2cs00387b
10.1039/d2cs00387b · External reference
10.1021/jm5011258
10.1021/jm5011258 · External reference
10.1038/nrc4027
10.1038/nrc4027 · External reference
10.1016/j.mam.2022.101106
10.1016/j.mam.2022.101106 · External reference
Antibody–peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins
10.1038/s41589-024-01627-z · 2024 · External reference
10.1016/j.ejmech.2024.116209
10.1016/j.ejmech.2024.116209 · External reference
Terazosin activates pgk1 and hsp90 to promote stress resistance
10.1038/nchembio.1657 · 2015 · External reference
10.1016/j.molmed.2025.03.008
10.1016/j.molmed.2025.03.008 · External reference
10.1098/rsob.200302
10.1098/rsob.200302 · External reference
10.1016/j.neo.2019.07.008
10.1016/j.neo.2019.07.008 · External reference
A potent pgk1 antagonist reveals pgk1 regulates the production of il-1β and il-6
10.1016/j.apsb.2022.05.012 · 2022 · External reference
10.1016/j.bcp.2025.117418
10.1016/j.bcp.2025.117418 · External reference
Regulation of programmed cell death by brd4
10.1038/s41419-022-05505-1 · 2022 · External reference
10.1038/s41416-020-01079-x
10.1038/s41416-020-01079-x · External reference
A patent review of brd4 inhibitors (2013-2019)
10.1080/13543776.2020.1702645 · 2020 · External reference
10.3389/fphar.2020.621093
10.3389/fphar.2020.621093 · External reference
10.1128/jvi.02333-20
10.1128/jvi.02333-20 · External reference
10.1073/pnas.2212931120
10.1073/pnas.2212931120 · External reference
Unresolved reference
External reference
Fragment binding to the nsp3 macrodomain of sars-cov-2 identified through crystallographic screening and computational docking
10.1126/sciadv.abf8711 · 2021 · External reference
10.1007/11871842_29
10.1007/11871842_29 · External reference
Unresolved reference
External reference
10.1101/2025.06.14.659707
10.1101/2025.06.14.659707 · External reference
10.1186/s13321-021-00548-6
10.1186/s13321-021-00548-6 · External reference
10.1021/acs.jcim.8b00234
10.1021/acs.jcim.8b00234 · External reference
10.21105/joss.00861
10.21105/joss.00861 · External reference
10.1186/s13321-014-0037-3
10.1186/s13321-014-0037-3 · External reference
Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions
2009 · External reference
10.1021/ci990307l
10.1021/ci990307l · External reference
10.1021/om100106e
10.1021/om100106e · External reference
10.1016/s1359-6446(97)01163-x
10.1016/s1359-6446(97)01163-x · External reference
Unresolved reference
External reference
Unresolved reference
External reference
10.1038/nature09504
10.1038/nature09504 · External reference
10.1126/science.add1964
10.1126/science.add1964 · External reference
10.1093/bioinformatics/btad066
10.1093/bioinformatics/btad066 · External reference
Unresolved reference
External reference
10.1093/bioinformatics/btu830
10.1093/bioinformatics/btu830 · External reference
10.26434/chemrxiv.15001752/v2
10.26434/chemrxiv.15001752/v2 · External reference
Us-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes
10.1038/s41592-022-01585-1 · 2022 · External reference
10.1038/s41586-024-07487-w
10.1038/s41586-024-07487-w · External reference
10.1107/s0021889809045701
10.1107/s0021889809045701 · External reference
10.1038/ncomms15123
10.1038/ncomms15123 · External reference
Features and development of coot
10.1107/s0907444910007493 · 2010 · External reference
Towards automated crystallographic structure refinement with phenix.refine
10.1107/s0907444912001308 · 2012 · External reference
10.1093/bioinformatics/bth214
10.1093/bioinformatics/bth214 · External reference
Unresolved reference
2005 · External reference
Conformation mining: an algorithm for finding biologically relevant conformations
10.1021/jm049066l · 2005 · External reference
10.1007/s10822-006-9085-8
10.1007/s10822-006-9085-8 · External reference
10.1021/acs.jcim.2c01504
10.1021/acs.jcim.2c01504 · External reference
10.1101/2025.02.03.636309
10.1101/2025.02.03.636309 · External reference
10.1101/2024.11.19.624167
10.1101/2024.11.19.624167 · External reference
10.1038/s41392-021-00780-4
10.1038/s41392-021-00780-4 · External reference
10.3389/fonc.2024.1380584
10.3389/fonc.2024.1380584 · External reference
10.1038/s41586-023-06123-3
10.1038/s41586-023-06123-3 · External reference
10.1038/s41586-019-1694-1
10.1038/s41586-019-1694-1 · External reference
10.1038/s41419-018-0844-y
10.1038/s41419-018-0844-y · External reference
10.1073/pnas.2403330121
10.1073/pnas.2403330121 · External reference
10.1093/nar/gkr777
10.1093/nar/gkr777 · External reference
10.1093/bioinformatics/btv082
10.1093/bioinformatics/btv082 · External reference
10.1021/acs.jcim.0c00850
10.1021/acs.jcim.0c00850 · External reference
The ccp4 suite: integrative software for macromolecular crystallography
2023 · External reference
Phenix: a comprehensive python-based system for macromolecular structure solution
10.1107/s0907444909052925 · 2010 · External reference
Pymol: An open-source molecular graphics tool
2002 · External reference
10.1002/(sici)1098-1128(199601)16:1<3::aid-med1>3.0.co;2-6
10.1002/(sici)1098-1128(199601)16:1<3::aid-med1>3.0.co;2-6 · ExternalCitation · doi-reference
10.1002/cmdc.200800178
10.1002/cmdc.200800178 · ExternalCitation · doi-reference
10.1002/minf.201700153
10.1002/minf.201700153 · ExternalCitation · doi-reference
10.1007/11871842_29
10.1007/11871842_29 · ExternalCitation · doi-reference
10.1007/978-3-030-01418-6_41
10.1007/978-3-030-01418-6_41 · ExternalCitation · doi-reference
10.1007/s10822-006-9085-8
10.1007/s10822-006-9085-8 · ExternalCitation · doi-reference
A potent pgk1 antagonist reveals pgk1 regulates the production of il-1β and il-6
10.1016/j.apsb.2022.05.012 · ExternalCitation · doi-reference
10.1016/j.bcp.2025.117418
10.1016/j.bcp.2025.117418 · ExternalCitation · doi-reference
The next level in chemical space navigation: going far beyond enumerable compound libraries
10.1016/j.drudis.2019.02.013 · ExternalCitation · doi-reference
10.1016/j.ejmech.2024.116209
10.1016/j.ejmech.2024.116209 · ExternalCitation · doi-reference
10.1016/j.isci.2020.101681
10.1016/j.isci.2020.101681 · ExternalCitation · doi-reference
10.1016/j.mam.2022.101106
10.1016/j.mam.2022.101106 · ExternalCitation · doi-reference
10.1016/j.molmed.2025.03.008
10.1016/j.molmed.2025.03.008 · ExternalCitation · doi-reference
10.1016/j.neo.2019.07.008
10.1016/j.neo.2019.07.008 · ExternalCitation · doi-reference
10.1016/s1359-6446(02)02483-2
10.1016/s1359-6446(02)02483-2 · ExternalCitation · doi-reference
10.1016/s1359-6446(97)01163-x
10.1016/s1359-6446(97)01163-x · ExternalCitation · doi-reference
10.1021/acs.jcim
10.1021/acs.jcim · ExternalCitation · doi-reference
10.1021/acs.jcim.0c00174
10.1021/acs.jcim.0c00174 · ExternalCitation · doi-reference
10.1021/acs.jcim.0c00411
10.1021/acs.jcim.0c00411 · ExternalCitation · doi-reference
10.1021/acs.jcim.0c00850
10.1021/acs.jcim.0c00850 · ExternalCitation · doi-reference
10.1021/acs.jcim.0c01009
10.1021/acs.jcim.0c01009 · ExternalCitation · doi-reference
10.1021/acs.jcim.2c01504
10.1021/acs.jcim.2c01504 · ExternalCitation · doi-reference
10.1021/acs.jcim.8b00228
10.1021/acs.jcim.8b00228 · ExternalCitation · doi-reference
10.1021/acs.jcim.8b00234
10.1021/acs.jcim.8b00234 · ExternalCitation · doi-reference
10.1021/acs.jcim.9b01120
10.1021/acs.jcim.9b01120 · ExternalCitation · doi-reference
10.1021/acs.jmedchem.2c00487
10.1021/acs.jmedchem.2c00487 · ExternalCitation · doi-reference
Automatic chemical design using a data-driven continuous representation of molecules
10.1021/acscentsci.7b00572 · ExternalCitation · doi-reference
10.1021/ci0255782
10.1021/ci0255782 · ExternalCitation · doi-reference
10.1021/ci990307l
10.1021/ci990307l · ExternalCitation · doi-reference
10.1021/ja209924v
10.1021/ja209924v · ExternalCitation · doi-reference
Augmented memory: sample-efficient generative molecular design with reinforcement learning
10.1021/jacsau.4c00066 · ExternalCitation · doi-reference
Conformation mining: an algorithm for finding biologically relevant conformations
10.1021/jm049066l · ExternalCitation · doi-reference
10.1021/jm5011258
10.1021/jm5011258 · ExternalCitation · doi-reference
10.1021/om100106e
10.1021/om100106e · ExternalCitation · doi-reference
10.1038/nature03197
10.1038/nature03197 · ExternalCitation · doi-reference
10.1038/nature09504
10.1038/nature09504 · ExternalCitation · doi-reference
Quantifying the chemical beauty of drugs
10.1038/nchem.1243 · ExternalCitation · doi-reference
Terazosin activates pgk1 and hsp90 to promote stress resistance
10.1038/nchembio.1657 · ExternalCitation · doi-reference
10.1038/ncomms15123
10.1038/ncomms15123 · ExternalCitation · doi-reference
10.1038/nrc4027
10.1038/nrc4027 · ExternalCitation · doi-reference
10.1038/s41392-021-00780-4
10.1038/s41392-021-00780-4 · ExternalCitation · doi-reference
10.1038/s41416-020-01079-x
10.1038/s41416-020-01079-x · ExternalCitation · doi-reference
10.1038/s41419-018-0844-y
10.1038/s41419-018-0844-y · ExternalCitation · doi-reference
Regulation of programmed cell death by brd4
10.1038/s41419-022-05505-1 · ExternalCitation · doi-reference
10.1038/s41573-026-01496-2
10.1038/s41573-026-01496-2 · ExternalCitation · doi-reference
10.1038/s41586-019-0917-9
10.1038/s41586-019-0917-9 · ExternalCitation · doi-reference
10.1038/s41586-019-1694-1
10.1038/s41586-019-1694-1 · ExternalCitation · doi-reference
10.1038/s41586-021-04220-9
10.1038/s41586-021-04220-9 · ExternalCitation · doi-reference
10.1038/s41586-023-05905-z
10.1038/s41586-023-05905-z · ExternalCitation · doi-reference
10.1038/s41586-023-06123-3
10.1038/s41586-023-06123-3 · ExternalCitation · doi-reference
10.1038/s41586-024-07487-w
10.1038/s41586-024-07487-w · ExternalCitation · doi-reference
Antibody–peptide conjugates deliver covalent inhibitors blocking oncogenic cathepsins
10.1038/s41589-024-01627-z · ExternalCitation · doi-reference
Us-align: universal structure alignments of proteins, nucleic acids, and macromolecular complexes
10.1038/s41592-022-01585-1 · ExternalCitation · doi-reference
10.1038/s42004-018-0068-1
10.1038/s42004-018-0068-1 · ExternalCitation · doi-reference
Improving de novo molecular design with curriculum learning
10.1038/s42256-022-00494-4 · ExternalCitation · doi-reference
10.1038/s42256-024-00815-9
10.1038/s42256-024-00815-9 · ExternalCitation · doi-reference
Sample-efficient generative molecular design using memory manipulation
10.1038/s42256-026-01200-4 · ExternalCitation · doi-reference
Structure-based drug design with equivariant diffusion models
10.1038/s43588-024-00737-x · ExternalCitation · doi-reference
10.1038/s43588-026-00998-8
10.1038/s43588-026-00998-8 · ExternalCitation · doi-reference
Augmented bindingnet dataset for enhanced ligand binding pose predictions using deep learning
10.1038/s44386-024-00003-0 · ExternalCitation · doi-reference
10.1039/d2cs00387b
10.1039/d2cs00387b · ExternalCitation · doi-reference
Posebusters: Ai-based docking methods fail to generate physically valid poses or generalise to novel sequences
10.1039/d3sc04185a · ExternalCitation · doi-reference
10.1073/pnas.2212931120
10.1073/pnas.2212931120 · ExternalCitation · doi-reference
10.1073/pnas.2403330121
10.1073/pnas.2403330121 · ExternalCitation · doi-reference
A patent review of brd4 inhibitors (2013-2019)
10.1080/13543776.2020.1702645 · ExternalCitation · doi-reference
10.1080/14686996.2017.1401424
10.1080/14686996.2017.1401424 · ExternalCitation · doi-reference
10.1093/bioinformatics/btad066
10.1093/bioinformatics/btad066 · ExternalCitation · doi-reference
10.1093/bioinformatics/bth214
10.1093/bioinformatics/bth214 · ExternalCitation · doi-reference
10.1093/bioinformatics/btu830
10.1093/bioinformatics/btu830 · ExternalCitation · doi-reference
10.1093/bioinformatics/btv082
10.1093/bioinformatics/btv082 · ExternalCitation · doi-reference
10.1093/nar/gkr777
10.1093/nar/gkr777 · ExternalCitation · doi-reference
10.1098/rsob.200302
10.1098/rsob.200302 · ExternalCitation · doi-reference
10.1101/2024.01.25.576086
10.1101/2024.01.25.576086 · ExternalCitation · doi-reference
10.1101/2024.07.17.603955
10.1101/2024.07.17.603955 · ExternalCitation · doi-reference
10.1101/2024.11.19.624167
10.1101/2024.11.19.624167 · ExternalCitation · doi-reference
10.1101/2025.02.03.636309
10.1101/2025.02.03.636309 · ExternalCitation · doi-reference
10.1101/2025.06.14.659707
10.1101/2025.06.14.659707 · ExternalCitation · doi-reference
10.1107/s0021889809045701
10.1107/s0021889809045701 · ExternalCitation · doi-reference
Phenix: a comprehensive python-based system for macromolecular structure solution
10.1107/s0907444909052925 · ExternalCitation · doi-reference
Features and development of coot
10.1107/s0907444910007493 · ExternalCitation · doi-reference
Towards automated crystallographic structure refinement with phenix.refine
10.1107/s0907444912001308 · ExternalCitation · doi-reference
Fragment binding to the nsp3 macrodomain of sars-cov-2 identified through crystallographic screening and computational docking
10.1126/sciadv.abf8711 · ExternalCitation · doi-reference
10.1126/science.add1964
10.1126/science.add1964 · ExternalCitation · doi-reference
10.1128/jvi.02333-20
10.1128/jvi.02333-20 · ExternalCitation · doi-reference
10.1186/s13321-014-0037-3
10.1186/s13321-014-0037-3 · ExternalCitation · doi-reference
10.1186/s13321-017-0235-x
10.1186/s13321-017-0235-x · ExternalCitation · doi-reference
10.1186/s13321-021-00522-2
10.1186/s13321-021-00522-2 · ExternalCitation · doi-reference
10.1186/s13321-021-00548-6
10.1186/s13321-021-00548-6 · ExternalCitation · doi-reference
10.21105/joss.00861
10.21105/joss.00861 · ExternalCitation · doi-reference
10.26434/chemrxiv.15001752/v2
10.26434/chemrxiv.15001752/v2 · ExternalCitation · doi-reference
10.3389/fonc.2024.1380584
10.3389/fonc.2024.1380584 · ExternalCitation · doi-reference
10.3389/fphar.2020.621093
10.3389/fphar.2020.621093 · ExternalCitation · doi-reference