Research graph
References from EM3DFold: accurate de novo protein and nucleic acid model building for cryo-EM maps using language model-powered deep learning. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1038/nmeth.3694
10.1038/nmeth.3694 · External reference
10.1038/nprot.2017.004
10.1038/nprot.2017.004 · External reference
10.1126/science.aat4346
10.1126/science.aat4346 · External reference
10.7554/elife.42166
10.7554/elife.42166 · External reference
10.1016/j.jsb.2016.04.010
10.1016/j.jsb.2016.04.010 · External reference
10.1038/nmeth.4169
10.1038/nmeth.4169 · External reference
10.1107/s0907444909052925
10.1107/s0907444909052925 · External reference
10.1002/pro.3865
10.1002/pro.3865 · External reference
10.1016/j.sbi.2025.103196
10.1016/j.sbi.2025.103196 · External reference
10.1093/nar/gkv1126
10.1093/nar/gkv1126 · External reference
10.1093/nar/28.1.235
10.1093/nar/28.1.235 · External reference
EMProt improves structure determination from cryo-EM maps
10.1038/s41594-025-01723-1 · 2026 · External reference
CryoAtom improves model building for cryo-EM
10.1038/s41594-025-01713-3 · 2026 · External reference
Unresolved reference
External reference
De novo main-chain modeling for EM maps using MAINMAST
10.1038/s41467-018-04053-7 · 2018 · External reference
A2-net: Molecular structure estimation from cryo-em density volumes
10.1609/aaai.v33i01.33011230 · 2019 · External reference
10.1093/bioinformatics/btab357
10.1093/bioinformatics/btab357 · External reference
10.1073/pnas.2017525118
10.1073/pnas.2017525118 · External reference
10.1038/s41586-024-07215-4
10.1038/s41586-024-07215-4 · External reference
De novo atomic protein structure modeling for cryoEM density maps using 3D transformer and HMM
10.1038/s41467-024-49647-6 · 2024 · External reference
10.1038/s41467-022-31748-9
10.1038/s41467-022-31748-9 · External reference
10.1038/s41592-023-02099-0
10.1038/s41592-023-02099-0 · External reference
Progressive assembly of multi-domain protein structures from cryo-EM density maps
10.1038/s43588-022-00232-1 · 2022 · External reference
10.1038/s41467-024-53116-5
10.1038/s41467-024-53116-5 · External reference
10.1038/s41592-024-02479-0
10.1038/s41592-024-02479-0 · External reference
10.21203/rs.3.rs-5776842/v1
10.21203/rs.3.rs-5776842/v1 · External reference
10.1038/s41592-018-0173-1
10.1038/s41592-018-0173-1 · External reference
10.1038/s41592-018-0172-2
10.1038/s41592-018-0172-2 · External reference
10.1038/s41592-020-0878-9
10.1038/s41592-020-0878-9 · External reference
10.1038/s41587-024-02149-8
10.1038/s41587-024-02149-8 · External reference
Automated detection and de novo structure modeling of nucleic acids from cryo-EM maps
10.1038/s41467-024-53721-4 · 2024 · External reference
10.1038/s41592-023-02032-5
10.1038/s41592-023-02032-5 · External reference
Unresolved reference
External reference
10.1038/s41592-023-02086-5
10.1038/s41592-023-02086-5 · External reference
10.1038/s41592-024-02487-0
10.1038/s41592-024-02487-0 · External reference
10.1126/science.ade2574
10.1126/science.ade2574 · External reference
RiNALMo: general-purpose RNA language models can generalize well on structure prediction tasks
10.1038/s41467-025-60872-5 · 2025 · External reference
10.1006/jmbi.1994.1104
10.1006/jmbi.1994.1104 · External reference
10.1093/bioinformatics/btad214
10.1093/bioinformatics/btad214 · External reference
10.1038/s41586-021-03819-2
10.1038/s41586-021-03819-2 · External reference
10.1038/s41586-024-07487-w
10.1038/s41586-024-07487-w · External reference
10.1038/nmeth.2727
10.1038/nmeth.2727 · External reference
10.1038/s41592-020-0731-1
10.1038/s41592-020-0731-1 · External reference
10.1093/nar/gkv716
10.1093/nar/gkv716 · External reference
10.1107/s0907444909042073
10.1107/s0907444909042073 · External reference
10.1126/science.adv3451
10.1126/science.adv3451 · External reference
10.1038/s41594-025-01650-1
10.1038/s41594-025-01650-1 · External reference
10.1038/s41586-025-09262-x
10.1038/s41586-025-09262-x · External reference
10.1038/s41586-025-09073-0
10.1038/s41586-025-09073-0 · External reference
10.1002/jcc.20084
10.1002/jcc.20084 · External reference
10.1038/nbt.3988
10.1038/nbt.3988 · External reference
10.1038/s41587-023-01773-0
10.1038/s41587-023-01773-0 · External reference
10.1038/s41467-023-39031-1
10.1038/s41467-023-39031-1 · External reference
10.1109/iccv48922.2021.00986
10.1109/iccv48922.2021.00986 · External reference
10.1016/j.jmb.2009.07.008
10.1016/j.jmb.2009.07.008 · External reference
10.1109/tip.2003.819861
10.1109/tip.2003.819861 · External reference
EMReady2: improvement of cryo-EM and cryo-ET maps by local quality-aware deep learning with Mamba
10.1038/s41467-026-71794-1 · 2026 · External reference
10.1126/science.abj8754
10.1126/science.abj8754 · External reference
Real-space refinement in PHENIX for cryo-EM and crystallography
2018 · External reference
