Research graph
References from Optimizing the connectivity of protein conformations to untangle ensemble refinement. Local targets link to admitted publications; unresolved targets remain external evidence.
10.1016/j.cell.2024.01.003
10.1016/j.cell.2024.01.003 · External reference
Umbrella refinement of ensembles—an alternative view of ensemble optimization
10.3390/molecules30112449 · 2025 · External reference
10.1016/j.str.2004.02.031
10.1016/j.str.2004.02.031 · External reference
10.1002/pro.423
10.1002/pro.423 · External reference
10.1038/s41557-023-01329-4
10.1038/s41557-023-01329-4 · External reference
From possibility to precision in macromolecular ensemble prediction
10.1038/s41592-026-03084-z · 2026 · External reference
10.1073/pnas.1111325108
10.1073/pnas.1111325108 · External reference
10.1038/ncomms4220
10.1038/ncomms4220 · External reference
Time-resolved protein side-chain motions unraveled by high-resolution relaxometry and molecular dynamics simulations
10.1021/jacs.8b09107 · 2018 · External reference
10.1107/s1600577516017343
10.1107/s1600577516017343 · External reference
10.7554/elife.00311
10.7554/elife.00311 · External reference
10.1111/febs.12922
10.1111/febs.12922 · External reference
Unresolved reference
External reference
10.1371/journal.pcbi.1004584
10.1371/journal.pcbi.1004584 · External reference
Unrefined ligand occupancy masks protein-binding site heterogeneity
10.1016/j.str.2026.02.011 · 2026 · External reference
10.1093/nar/gky949
10.1093/nar/gky949 · External reference
Model validation: local diagnosis, correction and when to quit
10.1107/s2059798317009834 · 2018 · External reference
10.1107/s1399004715006045
10.1107/s1399004715006045 · External reference
10.64898/2026.02.21.706873
10.64898/2026.02.21.706873 · External reference
10.1107/s0907444909052925
10.1107/s0907444909052925 · External reference
10.1107/s0907444904023510
10.1107/s0907444904023510 · External reference
10.1002/pro.4001
10.1002/pro.4001 · External reference
10.7554/elife.90606.3
10.7554/elife.90606.3 · External reference
Unresolved reference
2025 · External reference
Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins
10.1107/s0907444910019207 · 2010 · External reference
10.1107/s0907444999016364
10.1107/s0907444999016364 · External reference
10.1006/jmbi.1998.2400
10.1006/jmbi.1998.2400 · External reference
10.1107/s0907444909042073
10.1107/s0907444909042073 · External reference
10.1002/pro.3330
10.1002/pro.3330 · External reference
The common optimization interface for operations research: Promoting open-source software in the operations research community
10.1147/rd.471.0057 · 2003 · External reference
Unresolved reference
External reference
10.2210/pdb1aho/pdb
10.2210/pdb1aho/pdb · External reference
10.1016/j.str.2014.04.016
10.1016/j.str.2014.04.016 · External reference
10.2210/pdb4pth/pdb
10.2210/pdb4pth/pdb · External reference
10.2210/pdb4pth/pdb
10.2210/pdb4pth/pdb · External reference
10.1006/jmbi.1998.2401
10.1006/jmbi.1998.2401 · External reference
10.1093/nar/gkm216
10.1093/nar/gkm216 · External reference
10.2210/pdb5kxk/pdb
10.2210/pdb5kxk/pdb · External reference
10.2210/pdb7kr0/pdb
10.2210/pdb7kr0/pdb · External reference
10.1126/sciadv.abf8711
10.1126/sciadv.abf8711 · External reference
10.1107/s0907444910007493
10.1107/s0907444910007493 · External reference
10.1107/s0907444913000462
10.1107/s0907444913000462 · External reference
Improving sampling of crystallographic disorder in ensemble refinement
10.1107/s2059798321010044 · 2021 · External reference
10.1107/s2052252524005098
10.1107/s2052252524005098 · External reference
10.1002/pro.3330
10.1002/pro.3330 · ExternalCitation · doi-reference
10.1002/pro.4001
10.1002/pro.4001 · ExternalCitation · doi-reference
10.1002/pro.423
10.1002/pro.423 · ExternalCitation · doi-reference
10.1006/jmbi.1998.2400
10.1006/jmbi.1998.2400 · ExternalCitation · doi-reference
10.1006/jmbi.1998.2401
10.1006/jmbi.1998.2401 · ExternalCitation · doi-reference
10.1016/j.cell.2024.01.003
10.1016/j.cell.2024.01.003 · ExternalCitation · doi-reference
10.1016/j.str.2004.02.031
10.1016/j.str.2004.02.031 · ExternalCitation · doi-reference
10.1016/j.str.2014.04.016
10.1016/j.str.2014.04.016 · ExternalCitation · doi-reference
Unrefined ligand occupancy masks protein-binding site heterogeneity
10.1016/j.str.2026.02.011 · ExternalCitation · doi-reference
Time-resolved protein side-chain motions unraveled by high-resolution relaxometry and molecular dynamics simulations
10.1021/jacs.8b09107 · ExternalCitation · doi-reference
10.1038/ncomms4220
10.1038/ncomms4220 · ExternalCitation · doi-reference
10.1038/s41557-023-01329-4
10.1038/s41557-023-01329-4 · ExternalCitation · doi-reference
From possibility to precision in macromolecular ensemble prediction
10.1038/s41592-026-03084-z · ExternalCitation · doi-reference
10.1073/pnas.1111325108
10.1073/pnas.1111325108 · ExternalCitation · doi-reference
10.1093/nar/gkm216
10.1093/nar/gkm216 · ExternalCitation · doi-reference
10.1093/nar/gky949
10.1093/nar/gky949 · ExternalCitation · doi-reference
10.1107/s0907444904023510
10.1107/s0907444904023510 · ExternalCitation · doi-reference
10.1107/s0907444909042073
10.1107/s0907444909042073 · ExternalCitation · doi-reference
10.1107/s0907444909052925
10.1107/s0907444909052925 · ExternalCitation · doi-reference
10.1107/s0907444910007493
10.1107/s0907444910007493 · ExternalCitation · doi-reference
Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins
10.1107/s0907444910019207 · ExternalCitation · doi-reference
10.1107/s0907444913000462
10.1107/s0907444913000462 · ExternalCitation · doi-reference
10.1107/s0907444999016364
10.1107/s0907444999016364 · ExternalCitation · doi-reference
10.1107/s1399004715006045
10.1107/s1399004715006045 · ExternalCitation · doi-reference
10.1107/s1600577516017343
10.1107/s1600577516017343 · ExternalCitation · doi-reference
10.1107/s2052252524005098
10.1107/s2052252524005098 · ExternalCitation · doi-reference
Model validation: local diagnosis, correction and when to quit
10.1107/s2059798317009834 · ExternalCitation · doi-reference
Improving sampling of crystallographic disorder in ensemble refinement
10.1107/s2059798321010044 · ExternalCitation · doi-reference
10.1111/febs.12922
10.1111/febs.12922 · ExternalCitation · doi-reference
10.1126/sciadv.abf8711
10.1126/sciadv.abf8711 · ExternalCitation · doi-reference
The common optimization interface for operations research: Promoting open-source software in the operations research community
10.1147/rd.471.0057 · ExternalCitation · doi-reference
10.1371/journal.pcbi.1004584
10.1371/journal.pcbi.1004584 · ExternalCitation · doi-reference
10.2210/pdb1aho/pdb
10.2210/pdb1aho/pdb · ExternalCitation · doi-reference
10.2210/pdb4pth/pdb
10.2210/pdb4pth/pdb · ExternalCitation · doi-reference
10.2210/pdb5kxk/pdb
10.2210/pdb5kxk/pdb · ExternalCitation · doi-reference
10.2210/pdb7kr0/pdb
10.2210/pdb7kr0/pdb · ExternalCitation · doi-reference
Umbrella refinement of ensembles—an alternative view of ensemble optimization
10.3390/molecules30112449 · ExternalCitation · doi-reference
10.64898/2026.02.21.706873
10.64898/2026.02.21.706873 · ExternalCitation · doi-reference
10.7554/elife.00311
10.7554/elife.00311 · ExternalCitation · doi-reference
10.7554/elife.90606.3
10.7554/elife.90606.3 · ExternalCitation · doi-reference
