Research graph
References from Genomic epidemiology reveals post-vaccine re-emergence of vaccine-associated G1P[8] rotavirus lineages with variable disease severity. Local targets link to admitted publications; unresolved targets remain external evidence.
Rotavirus Vaccination and the Global Burden of Rotavirus Diarrhea Among Children Younger Than 5 Years
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Aetiology and incidence of diarrhoea requiring hospitalisation in children under 5 years of age in 28 low-income and middle-income countries: findings from the Global Pediatric Diarrhea Surveillance network. BMJ Glob
2022 · External reference
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10.1080/14760584.2021.1902808
10.1080/14760584.2021.1902808 · External reference
10.1016/j.vaccine.2013.12.017
10.1016/j.vaccine.2013.12.017 · External reference
10.1016/j.vaccine.2016.04.080
10.1016/j.vaccine.2016.04.080 · External reference
10.1016/j.vaccine.2017.11.031
10.1016/j.vaccine.2017.11.031 · External reference
The impact of improved water, sanitation, and hygiene on oral Rotavirus vaccine immunogenicity in Zimbabwean infants: Substudy of a cluster-randomized trial
10.1093/cid/ciz140 · 2019 · External reference
Exploring the relationship between environmental enteric dysfunction and oral vaccine responses
10.2217/fmb-2018-0016 · 2018 · External reference
Pathophysiology of environmental enteric dysfunction and its impact on oral vaccine efficacy
10.1038/s41385-018-0036-1 · 2018 · External reference
10.1097/inf.0000000000003286
10.1097/inf.0000000000003286 · External reference
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10.1128/mbio.02755-20
10.1128/mbio.02755-20 · External reference
10.1016/j.vetmic.2013.07.016
10.1016/j.vetmic.2013.07.016 · External reference
Interspecies Transmission of Animal Rotaviruses to Humans: Reassortment-Driven Adaptation
10.3390/pathogens14121230 · 2025 · External reference
10.1007/s11427-020-1893-9
10.1007/s11427-020-1893-9 · External reference
Viral infection and transmission in a large, well-traced outbreak caused by the SARS-CoV-2 Delta variant
10.1038/s41467-022-28089-y · 2022 · External reference
The Disease Severity and Clinical Outcomes of the SARS-CoV-2 Variants of Concern
10.3389/fpubh.2021.775224 · 2021 · External reference
10.3201/eid2811.220577
10.3201/eid2811.220577 · External reference
SARS-CoV-2 Disease Severity and Cycle Threshold Values in Children Infected during Pre-Delta, Delta, and Omicron Periods, Colorado, USA, 2021-2022
2024 · External reference
10.1038/s41586-021-03944-y
10.1038/s41586-021-03944-y · External reference
10.1038/s41586-021-03777-9
10.1038/s41586-021-03777-9 · External reference
10.1038/s41586-021-04389-z
10.1038/s41586-021-04389-z · External reference
10.3389/fimmu.2022.816389
10.3389/fimmu.2022.816389 · External reference
10.3389/fimmu.2021.793191
10.3389/fimmu.2021.793191 · External reference
10.1038/s41591-023-02219-5
10.1038/s41591-023-02219-5 · External reference
10.1093/ve/veab044
10.1093/ve/veab044 · External reference
10.1016/j.jcv.2009.11.003
10.1016/j.jcv.2009.11.003 · External reference
10.1007/s10156-011-0314-2
10.1007/s10156-011-0314-2 · External reference
10.1038/s41586-023-06649-6
10.1038/s41586-023-06649-6 · External reference
10.1016/s0140-6736(06)68815-6
10.1016/s0140-6736(06)68815-6 · External reference
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10.1093/infdis/jiaa616
10.1093/infdis/jiaa616 · External reference
10.1128/jvi.01246-17
10.1128/jvi.01246-17 · External reference
10.1128/jvi.02257-07
10.1128/jvi.02257-07 · External reference
10.1016/j.coviro.2012.04.007
10.1016/j.coviro.2012.04.007 · External reference
10.1093/cid/civ1183
10.1093/cid/civ1183 · External reference
10.1093/molbev/msv035
10.1093/molbev/msv035 · External reference
10.1371/journal.pcbi.1002507
10.1371/journal.pcbi.1002507 · External reference
Relation of VP7 amino acid sequence to monoclonal antibody neutralization of rotavirus and rotavirus monotype
10.1128/jvi.65.11.5968-5974.1991 · 1991 · External reference
10.1126/science.1170481
10.1126/science.1170481 · External reference
A rotavirus VP4 or VP7 monoreassortant panel identifies genotypes that are less susceptible to neutralization by systemic antibodies induced by vaccination or natural infection
10.1128/mbio.00897-25 · 2025 · External reference
10.1128/jcm.28.2.276-282.1990
10.1128/jcm.28.2.276-282.1990 · External reference
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10.1016/j.vaccine.2011.09.111
10.1016/j.vaccine.2011.09.111 · External reference
10.1016/j.meegid.2014.08.017
10.1016/j.meegid.2014.08.017 · External reference
10.1371/journal.pbio.0030300
10.1371/journal.pbio.0030300 · External reference
10.1038/nature04239
10.1038/nature04239 · External reference
10.1038/nature14460
10.1038/nature14460 · External reference
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10.1128/jvi.76.13.6643-6651.2002
10.1128/jvi.76.13.6643-6651.2002 · External reference
10.1126/scitranslmed.aam5434
10.1126/scitranslmed.aam5434 · External reference
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Characterization of a G1P[8] rotavirus causing an outbreak of gastroenteritis in the Northern Territory, Australia, in the vaccine era
2014 · External reference
Whole genome in-silico analysis of South African G1P[8] Rotavirus strains before and after vaccine introduction over A period of 14 years
10.3390/vaccines8040609 · 2020 · External reference
Whole genome characterization and evolutionary analysis of G1P[8] Rotavirus A strains during the pre- and post-vaccine periods in Mozambique (2012-2017)
10.3390/pathogens9121026 · 2020 · External reference
Molecular evolutionary analysis of novel NSP4 mono-reassortant G1P[8]-E2 rotavirus strains that caused a discontinuous epidemic in Japan in 2015 and 2018
10.3389/fmicb.2024.1430557 · 2024 · External reference
Reduction in Severity of All-Cause Gastroenteritis Requiring Hospitalisation in Children Vaccinated against Rotavirus in Malawi
10.3390/v13122491 · 2021 · External reference
Association of rotavirus strains and severity of gastroenteritis in Indian children
10.1080/21645515.2016.1238994 · 2017 · External reference
10.1038/s41467-022-33614-0
10.1038/s41467-022-33614-0 · External reference
Clinical characteristics of patients with laboratory-confirmed influenza A(H1N1)pdm09 during the 2013/2014 and 2015/2016 clade 6B/6B.1/6B.2-predominant outbreaks
10.1038/s41598-018-34077-4 · 2018 · External reference
10.1371/journal.pcbi.1012469
10.1371/journal.pcbi.1012469 · External reference
10.1038/s41467-021-25649-6
10.1038/s41467-021-25649-6 · External reference
Genome-wide association study of HIV whole genome sequences validated using drug resistance
10.1371/journal.pone.0163746 · 2016 · External reference
10.21203/rs.3.rs-10565996/v1
10.21203/rs.3.rs-10565996/v1 · External reference
10.1038/ng.3835
10.1038/ng.3835 · External reference
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10.1093/ve/vead030
10.1093/ve/vead030 · External reference
10.1016/s0166-0934(98)00168-2
10.1016/s0166-0934(98)00168-2 · External reference
10.3201/eid2509.190258
10.3201/eid2509.190258 · External reference
Infection, Genetics and Evolution Whole genome analysis of multiple rotavirus strains from a single stool specimen using sequence-independent amplification and 454 Ò pyrosequencing reveals evidence of intergenotype genome segment recombination
10.1016/j.meegid.2011.09.023 · 2011 · External reference
10.3390/pathogens9050391
10.3390/pathogens9050391 · External reference
Whole genome and in-silico analyses of G1P[8] rotavirus strains from pre- and post-vaccination periods in Rwanda
10.1038/s41598-020-69973-1 · 2020 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
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10.1093/bioinformatics/btu170
10.1093/bioinformatics/btu170 · External reference
10.1093/bioinformatics/bts199
10.1093/bioinformatics/bts199 · External reference
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10.1093/nar/gkh340
10.1093/nar/gkh340 · External reference
10.1093/molbev/msaa015
10.1093/molbev/msaa015 · External reference
10.1093/molbev/msz240
10.1093/molbev/msz240 · External reference
10.7717/peerj.16505
10.7717/peerj.16505 · External reference
10.1093/bioinformatics/bts184
10.1093/bioinformatics/bts184 · External reference
10.1111/2041–210x.12628
10.1111/2041–210x.12628 · External reference
Nextclade: clade assignment, mutation calling and quality control for viral genomes
10.21105/joss.03773 · 2021 · External reference
10.1093/ve/vex042
10.1093/ve/vex042 · External reference
10.1093/molbev/msy194
10.1093/molbev/msy194 · External reference
10.1093/bioinformatics/bti079
10.1093/bioinformatics/bti079 · External reference
10.1371/journal.pgen.1002764
10.1371/journal.pgen.1002764 · External reference
10.1093/molbev/mst010
10.1093/molbev/mst010 · External reference
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Welcome to the tidyverse
10.21105/joss.01686 · 2019 · External reference
10.1093/bioinformatics/btae510
10.1093/bioinformatics/btae510 · External reference
10.1093/nar/gky427
10.1093/nar/gky427 · External reference
10.1002/pro.3235
10.1002/pro.3235 · External reference
10.1002/pro.3943
10.1002/pro.3943 · External reference
10.1093/nar/gkz956
10.1093/nar/gkz956 · External reference
