Research graph
References from Genomic structural variation in clownfish adaptive radiation. Local targets link to admitted publications; unresolved targets remain external evidence.
topGO: Enrichment Analysis for Gene Ontology
2025 · External reference
10.1101/gr.243212.118
10.1101/gr.243212.118 · External reference
Deleterious mutation accumulation and the long-term fate of chromosomal inversions
10.1371/journal.pgen.1009411 · 2021 · External reference
10.1111/jeb.13725
10.1111/jeb.13725 · External reference
10.1126/science.adr9961
10.1126/science.adr9961 · External reference
10.7717/peerj.1660
10.7717/peerj.1660 · External reference
Sensitive protein alignments at tree-of-life scale using DIAMOND
10.1038/s41592-021-01101-x · 2021 · External reference
Mechanisms of structural chromosomal rearrangement formation
10.1186/s13039-022-00600-6 · 2022 · External reference
10.1093/bioinformatics/btp348
10.1093/bioinformatics/btp348 · External reference
10.1038/nrg.2015.25
10.1038/nrg.2015.25 · External reference
10.1186/s13059-021-02527-4
10.1186/s13059-021-02527-4 · External reference
10.1038/s41587-022-01261-x
10.1038/s41587-022-01261-x · External reference
Population Genomics of Adaptive Radiation
10.1111/mec.17574 · 2025 · External reference
10.1186/s12859-021-04451-7
10.1186/s12859-021-04451-7 · External reference
10.1073/pnas.0706604104
10.1073/pnas.0706604104 · External reference
10.1093/bioinformatics/btr330
10.1093/bioinformatics/btr330 · External reference
Six3 and six6 are jointly required for the maintenance of multipotent retinal progenitors through both positive and negative regulation
10.1016/j.celrep.2018.10.106 · 2018 · External reference
AntiFam: a tool to help identify spurious ORFs in protein annotation
2012 · External reference
10.1093/bioinformatics/btw354
10.1093/bioinformatics/btw354 · External reference
Zebrafish leucocyte tyrosine kinase controls iridophore establishment, proliferation and survival
10.1111/pcmr.12454 · 2016 · External reference
Evolving inversions
10.1016/j.tree.2018.12.005 · 2019 · External reference
Six3 and six6 jointly control diverse target genes in multiple cell populations over developmental trajectories of mouse embryonic retinal progenitor cells
10.1371/journal.pone.0308839 · 2024 · External reference
Unresolved reference
External reference
10.1186/s12864-026-12570-9
10.1186/s12864-026-12570-9 · External reference
10.1073/pnas.1921046117
10.1073/pnas.1921046117 · External reference
Host use drives convergent evolution in clownfish
10.1073/pnas.2419716122 · 2025 · External reference
10.1101/2023.06.10.544449
10.1101/2023.06.10.544449 · External reference
Species integrity, introgression, and genetic variation across a coral reef fish hybrid zone
10.1002/ece3.6769 · 2020 · External reference
Hierarchical behaviour, habitat use and species size differences shape evolutionary outcomes of hybridization in a coral reef fish
10.1111/jeb.12557 · 2015 · External reference
Habitat specialisation impacts clownfish demographic resilience to pleistocene sea-level fluctuations
10.1111/mec.70134 · 2025 · External reference
10.1093/bioinformatics/btac196
10.1093/bioinformatics/btac196 · External reference
10.1186/s13059-019-1911-0
10.1186/s13059-019-1911-0 · External reference
How repeats rearrange chromosomes: The molecular basis of chromosomal inversions in deer mice
10.1016/j.celrep.2025.115644 · 2025 · External reference
10.1093/bioinformatics/btaa025
10.1093/bioinformatics/btaa025 · External reference
10.1093/gbe/evy223
10.1093/gbe/evy223 · External reference
N-acetylated sugars in clownfish and damselfish skin mucus as messengers involved in chemical recognition by anemone host
10.1038/s41598-024-84495-w · 2025 · External reference
Divergence in metabolomic profile in clownfish and damselfish skin mucus
10.3389/fevo.2023.1050083 · 2023 · External reference
10.1073/pnas.2102914118
10.1073/pnas.2102914118 · External reference
10.1016/j.cub.2018.04.072
10.1016/j.cub.2018.04.072 · External reference
10.1038/nature10944
10.1038/nature10944 · External reference
10.1093/bioinformatics/btu031
10.1093/bioinformatics/btu031 · External reference
10.1038/nature10341
10.1038/nature10341 · External reference
10.1093/molbev/mst010
10.1093/molbev/mst010 · External reference
10.1534/genetics.105.047985
10.1534/genetics.105.047985 · External reference
10.1093/molbev/msae092
10.1093/molbev/msae092 · External reference
10.1038/s41587-019-0072-8
10.1038/s41587-019-0072-8 · External reference
Chromosome-scale telomere to telomere genome assembly of common crystalwort (riccia sorocarpa bisch
10.1038/s41597-025-04373-6 · 2025 · External reference
10.1101/gr.092759.109
10.1101/gr.092759.109 · External reference
10.1093/nar/gkac998
10.1093/nar/gkac998 · External reference
10.1038/ng.3443
10.1038/ng.3443 · External reference
10.1093/bioinformatics/btp328
10.1093/bioinformatics/btp328 · External reference
10.1371/journal.pcbi.1003118
10.1371/journal.pcbi.1003118 · External reference
Finding Nemo’s Genes: A chromosome-scale reference assembly of the genome of the orange clownfish Amphiprion percula
10.1111/1755-0998.12939 · 2019 · External reference
10.1093/nar/gkae268
10.1093/nar/gkae268 · External reference
10.1093/bioinformatics/btq671
10.1093/bioinformatics/btq671 · External reference
10.1093/bioinformatics/bty191
10.1093/bioinformatics/bty191 · External reference
10.1093/bioinformatics/btp324
10.1093/bioinformatics/btp324 · External reference
10.1038/s41576-024-00718-w
10.1038/s41576-024-00718-w · External reference
10.1093/bioinformatics/btp352
10.1093/bioinformatics/btp352 · External reference
Hybridisation and diversification in the adaptive radiation of clownfishes
10.1186/s12862-014-0245-5 · 2014 · External reference
Mutualism with sea anemones triggered the adaptive radiation of clownfishes
10.1186/1471-2148-12-212 · 2012 · External reference
Leukocyte tyrosine kinase functions in pigment cell development
10.1371/journal.pgen.1000026 · 2008 · External reference
10.64898/2026.06.26.733778
10.64898/2026.06.26.733778 · External reference
10.1186/s13059-019-1828-7
10.1186/s13059-019-1828-7 · External reference
10.1111/mec.17347
10.1111/mec.17347 · External reference
10.1093/gbe/evz042
10.1093/gbe/evz042 · External reference
10.1093/gbe/evad088
10.1093/gbe/evad088 · External reference
MUMmer4: A fast and versatile genome alignment system
10.1371/journal.pcbi.1005944 · 2018 · External reference
10.1093/bioinformatics/btr011
10.1093/bioinformatics/btr011 · External reference
North american pitseed goosefoot (chenopodium berlandieri) is a genetic resource to improve andean quinoa (c. quinoa)
10.1038/s41598-024-63106-8 · 2024 · External reference
Integrative phenotyping reveals new insights into the anemonefish adaptive radiation
10.1016/j.cub.2025.06.041 · 2025 · External reference
10.1093/nar/gki418
10.1093/nar/gki418 · External reference
IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era
2020 · External reference
10.1093/nar/gkaa913
10.1093/nar/gkaa913 · External reference
10.1073/pnas.1710254114
10.1073/pnas.1710254114 · External reference
The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish
10.1093/g3journal/jkad002 · 2023 · External reference
Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom
10.1038/s41559-022-01956-z · 2023 · External reference
A Roadmap for Understanding the Evolutionary Significance of Structural Genomic Variation
10.1016/j.tree.2020.03.002 · 2020 · External reference
10.1371/journal.pone.0098449
10.1371/journal.pone.0098449 · External reference
10.1038/s41587-024-02147-w
10.1038/s41587-024-02147-w · External reference
10.1101/gr.263566.120
10.1101/gr.263566.120 · External reference
vegan: Community Ecology Package
2026 · External reference
10.1186/s13059-019-1905-y
10.1186/s13059-019-1905-y · External reference
10.1093/bioinformatics/bty633
10.1093/bioinformatics/bty633 · External reference
The brittle star genome illuminates the genetic basis of animal appendage regeneration
10.1038/s41559-024-02456-y · 2024 · External reference
10.1111/mec.17339
10.1111/mec.17339 · External reference
10.1038/s41588-020-0646-x
10.1038/s41588-020-0646-x · External reference
A high-quality chromosomal genome assembly of the sea cucumber chiridota heheva and its hydrothermal adaptation
10.1093/gigascience/giad107 · 2024 · External reference
10.1101/gr.279674.124
10.1101/gr.279674.124 · External reference
syntenyPlotteR: a user-friendly r package to visualize genome synteny, ideal for both experienced and novice bioinformaticians
10.1093/bioadv/vbad161 · 2023 · External reference
Unresolved reference
External reference
Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures
10.1016/j.xgen.2023.100281 · 2023 · External reference
10.5281/zenodo.3336593
10.5281/zenodo.3336593 · External reference
Chromosome-level genome of the three-spot damselfish, dascyllus trimaculatus
10.1093/g3journal/jkac339 · 2023 · External reference
Anemonefish use sialic acid metabolism as trojan horse to avoid giant sea anemone stinging
10.1186/s12915-025-02144-8 · 2025 · External reference
Sea anemone and clownfish microbiota diversity and variation during the initial steps of symbiosis
10.1038/s41598-019-55756-w · 2019 · External reference
10.1016/j.celrep.2023.112661
10.1016/j.celrep.2023.112661 · External reference
A chromosome-scale genome assembly of the false clownfish, Amphiprion ocellaris
10.1093/g3journal/jkac074 · 2022 · External reference
Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish
10.1111/pcmr.12766 · 2019 · External reference
10.1073/pnas.2101634118
10.1073/pnas.2101634118 · External reference
Ontogenetic and phylogenetic simplification during white stripe evolution in clownfishes
10.1186/s12915-018-0559-7 · 2018 · External reference
Gene flow throughout the evolutionary history of a colour polymorphic and generalist clownfish
10.1111/mec.17436 · 2024 · External reference
10.1093/gbe/evaf031
10.1093/gbe/evaf031 · External reference
10.1101/2022.07.08.499304
10.1101/2022.07.08.499304 · External reference
10.1093/bioinformatics/btv351
10.1093/bioinformatics/btv351 · External reference
Unresolved reference
External reference
10.1038/s41587-023-02024-y
10.1038/s41587-023-02024-y · External reference
10.1093/genetics/21.5.554
10.1093/genetics/21.5.554 · External reference
Molecular drivers of mutualistic association between anemone and anemonefish
10.1093/gbe/evag197 · 2026 · External reference
10.1093/nar/gkae1010
10.1093/nar/gkae1010 · External reference
10.1101/507384
10.1101/507384 · External reference
10.1093/bioinformatics/bty994
10.1093/bioinformatics/bty994 · External reference
10.1210/en.2006-0511
10.1210/en.2006-0511 · External reference
10.1093/bioinformatics/btx153
10.1093/bioinformatics/btx153 · External reference
10.1111/mec.15066
10.1111/mec.15066 · External reference
Beyond supergenes: the diverse roles of inversions in trait evolution
10.1016/j.tree.2025.08.004 · 2025 · External reference
10.1007/978-3-319-24277-4_9
10.1007/978-3-319-24277-4_9 · External reference
10.3390/genes12071084
10.3390/genes12071084 · External reference
A telomere-to-telomere gap-free genome assembly of the protandrous maroon clownfish (Premnas biaculeatus)
10.1038/s41597-025-06538-9 · 2026 · External reference
Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
10.1038/s43588-022-00387-x · 2022 · External reference
10.1186/s12864-018-4567-3
10.1186/s12864-018-4567-3 · External reference
10.1093/bioinformatics/btt476
10.1093/bioinformatics/btt476 · External reference
The SAMBA tool uses long reads to improve the contiguity of genome assemblies
10.1371/journal.pcbi.1009860 · 2022 · External reference
10.1242/dev.00723
10.1242/dev.00723 · External reference
