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References from ProxiNet transfers spatially learned cellular proximity to dissociated single-cell transcriptomes. Local targets link to admitted publications; unresolved targets remain external evidence.
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10.1016/j.cell.2020.07.005
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10.1038/s41587-023-01697-9
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CellContrast: Reconstructing spatial relationships in single-cell RNA sequencing data via deep contrastive learning
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Nicheformer: a foundation model for single-cell and spatial omics
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10.1145/3711896.3736947
10.1145/3711896.3736947 · External reference
10.1038/s41467-022-30755-0
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10.1038/s41586-023-06812-z · External reference
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2025 · External reference
10.1038/s41586-024-07606-7
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Human astrocytes and microglia show augmented ingestion of synapses in Alzheimer’s disease via MFG-E8
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10.3389/fncel.2022.899251
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10.1186/s13059-017-1382-0
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CCPlotR: an R package for the visualization of cell-cell interactions
10.1093/bioadv/vbad130 · 2023 · External reference
