Research graph
References from Benchmarking Universal Single-Copy Orthologs for Phylogenomics: The Impact of Paralogy. Local targets link to admitted publications; unresolved targets remain external evidence.
Universal orthologs infer deep phylogenies and improve genome quality assessments
10.1186/s12915-025-02328-2 · 2025 · External reference
Standardized benchmarking in the quest for orthologs
10.1038/nmeth.3830 · 2016 · External reference
10.7717/peerj.1660
10.7717/peerj.1660 · External reference
10.3390/insects14090775
10.3390/insects14090775 · External reference
10.1038/s41559-020-1166-x
10.1038/s41559-020-1166-x · External reference
OrthoFinder: improved phylogenetic orthology inference with enhanced accuracy and scalability
10.1038/s41592-026-03126-6 · 2026 · External reference
10.1093/sysbio/sys004
10.1093/sysbio/sys004 · External reference
10.1126/science.abl8189
10.1126/science.abl8189 · External reference
Phylogenomic blind spots: the limits of UCE and BUSCO loci in the presence of gene flow
10.1093/molbev/msag155 · 2026 · External reference
10.1093/molbev/msp259
10.1093/molbev/msp259 · External reference
10.1093/sysbio/syq010
10.1093/sysbio/syq010 · External reference
10.1186/gb-2007-8-8-109
10.1186/gb-2007-8-8-109 · External reference
10.1093/molbev/msw046
10.1093/molbev/msw046 · External reference
10.1002/9780470015902.a0029211
10.1002/9780470015902.a0029211 · External reference
10.1038/s41559-017-0240-5
10.1038/s41559-017-0240-5 · External reference
10.1038/s41467-022-30722-9
10.1038/s41467-022-30722-9 · External reference
Phylogenomic insights into the origin of primary plastids
2022 · External reference
10.1093/bioinformatics/btu462
10.1093/bioinformatics/btu462 · External reference
10.1038/nmeth.4285
10.1038/nmeth.4285 · External reference
10.1038/s41576-020-0233-0
10.1038/s41576-020-0233-0 · External reference
10.1093/bib/bbx108
10.1093/bib/bbx108 · External reference
10.1146/annurev.genet.39.073003.114725
10.1146/annurev.genet.39.073003.114725 · External reference
10.1038/nature17164
10.1038/nature17164 · External reference
10.1093/mol-bev/msab199
10.1093/mol-bev/msab199 · External reference
10.1093/molbev/msaa015
10.1093/molbev/msaa015 · External reference
10.18061/bssb.6848
10.18061/bssb.6848 · External reference
10.3374/014.065.0101
10.3374/014.065.0101 · External reference
10.1093/molbev/msu300
10.1093/molbev/msu300 · External reference
10.1101/gr.276953.122
10.1101/gr.276953.122 · External reference
10.1186/s13059-017-1241-z
10.1186/s13059-017-1241-z · External reference
10.1371/journal.pone.0163962
10.1371/journal.pone.0163962 · External reference
10.1038/s41559-017-0126
10.1038/s41559-017-0126 · External reference
10.1126/sciadv.aax3917
10.1126/sciadv.aax3917 · External reference
10.1093/bioinformatics/btv351
10.1093/bioinformatics/btv351 · External reference
10.1016/s0168-9525(02)02793-2
10.1016/s0168-9525(02)02793-2 · External reference
10.1371/journal.pbio.3001007
10.1371/journal.pbio.3001007 · External reference
10.1371/journal.pone.0062892
10.1371/journal.pone.0062892 · External reference
10.1093/nar/gkae987
10.1093/nar/gkae987 · External reference
Phylogenomic resolution of order-and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes
10.3389/fpls.2022.876779 · 2022 · External reference
Unresolved reference
External reference
10.1093/molbev/msx319
10.1093/molbev/msx319 · External reference
10.1038/s41467-019-12644-1
10.1038/s41467-019-12644-1 · External reference
10.1093/sysbio/syab056
10.1093/sysbio/syab056 · External reference
10.1093/bioinformatics/btac620
10.1093/bioinformatics/btac620 · External reference
